Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 DUX4L23-201ENST00000615195 1269 ntBASIC17.69■□□□□ 0.42
TRAV1-1A0A0B4J248 DUX4L24-201ENST00000617576 1269 ntBASIC17.69■□□□□ 0.42
TRAV1-1A0A0B4J248 DUX4L22-201ENST00000618238 1269 ntBASIC17.69■□□□□ 0.42
TRAV1-1A0A0B4J248 DUX4L20-201ENST00000619712 1269 ntBASIC17.69■□□□□ 0.42
TRAV1-1A0A0B4J248 DUX4L21-201ENST00000622058 1269 ntBASIC17.69■□□□□ 0.42
TRAV1-1A0A0B4J248 DUX4L10-201ENST00000622460 1267 ntBASIC17.69■□□□□ 0.42
TRAV1-1A0A0B4J248 DUX4L25-201ENST00000624915 1269 ntBASIC17.69■□□□□ 0.42
TRAV1-1A0A0B4J248 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV1-1A0A0B4J248 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV1-1A0A0B4J248 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAV1-1A0A0B4J248 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV1-1A0A0B4J248 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV1-1A0A0B4J248 AC073130.3-201ENST00000624389 2278 ntBASIC17.68■□□□□ 0.42
TRAV1-1A0A0B4J248 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV1-1A0A0B4J248 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
TRAV1-1A0A0B4J248 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV1-1A0A0B4J248 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV1-1A0A0B4J248 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV1-1A0A0B4J248 BOD1-206ENST00000480951 814 ntTSL 2 BASIC17.68■□□□□ 0.42
TRAV1-1A0A0B4J248 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC17.68■□□□□ 0.42
TRAV1-1A0A0B4J248 AC044849.2-201ENST00000606596 710 ntBASIC17.68■□□□□ 0.42
TRAV1-1A0A0B4J248 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV1-1A0A0B4J248 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV1-1A0A0B4J248 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV1-1A0A0B4J248 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
TRAV1-1A0A0B4J248 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV1-1A0A0B4J248 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC17.68■□□□□ 0.42
TRAV1-1A0A0B4J248 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV1-1A0A0B4J248 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV1-1A0A0B4J248 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC17.67■□□□□ 0.42
TRAV1-1A0A0B4J248 HLA-V-202ENST00000446817 847 ntBASIC17.67■□□□□ 0.42
TRAV1-1A0A0B4J248 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV1-1A0A0B4J248 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV1-1A0A0B4J248 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC17.67■□□□□ 0.42
TRAV1-1A0A0B4J248 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV1-1A0A0B4J248 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV1-1A0A0B4J248 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV1-1A0A0B4J248 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
TRAV1-1A0A0B4J248 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV1-1A0A0B4J248 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV1-1A0A0B4J248 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV1-1A0A0B4J248 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
TRAV1-1A0A0B4J248 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC17.66■□□□□ 0.42
TRAV1-1A0A0B4J248 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV1-1A0A0B4J248 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
TRAV1-1A0A0B4J248 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV1-1A0A0B4J248 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
TRAV1-1A0A0B4J248 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC17.66■□□□□ 0.42
TRAV1-1A0A0B4J248 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
TRAV1-1A0A0B4J248 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
TRAV1-1A0A0B4J248 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC17.66■□□□□ 0.42
TRAV1-1A0A0B4J248 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV1-1A0A0B4J248 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV1-1A0A0B4J248 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC17.66■□□□□ 0.42
TRAV1-1A0A0B4J248 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC17.66■□□□□ 0.42
TRAV1-1A0A0B4J248 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV1-1A0A0B4J248 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV1-1A0A0B4J248 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV1-1A0A0B4J248 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
TRAV1-1A0A0B4J248 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV1-1A0A0B4J248 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
TRAV1-1A0A0B4J248 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC17.65■□□□□ 0.42
TRAV1-1A0A0B4J248 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.42
TRAV1-1A0A0B4J248 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
TRAV1-1A0A0B4J248 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV1-1A0A0B4J248 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC17.64■□□□□ 0.41
TRAV1-1A0A0B4J248 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV1-1A0A0B4J248 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV1-1A0A0B4J248 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV1-1A0A0B4J248 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC17.64■□□□□ 0.41
TRAV1-1A0A0B4J248 LINC01971-201ENST00000617888 1048 ntBASIC17.64■□□□□ 0.41
TRAV1-1A0A0B4J248 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV1-1A0A0B4J248 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV1-1A0A0B4J248 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
TRAV1-1A0A0B4J248 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV1-1A0A0B4J248 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV1-1A0A0B4J248 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV1-1A0A0B4J248 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV1-1A0A0B4J248 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV1-1A0A0B4J248 MIR3960-201ENST00000583311 91 ntBASIC17.63■□□□□ 0.41
TRAV1-1A0A0B4J248 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV1-1A0A0B4J248 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV1-1A0A0B4J248 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV1-1A0A0B4J248 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV1-1A0A0B4J248 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
TRAV1-1A0A0B4J248 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV1-1A0A0B4J248 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
TRAV1-1A0A0B4J248 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
TRAV1-1A0A0B4J248 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV1-1A0A0B4J248 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC17.62■□□□□ 0.41
TRAV1-1A0A0B4J248 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV1-1A0A0B4J248 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV1-1A0A0B4J248 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV1-1A0A0B4J248 AC025884.2-201ENST00000553429 711 ntBASIC17.62■□□□□ 0.41
TRAV1-1A0A0B4J248 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV1-1A0A0B4J248 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV1-1A0A0B4J248 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV1-1A0A0B4J248 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV1-1A0A0B4J248 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV1-1A0A0B4J248 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms