Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 AP003398.1-201ENST00000531124 318 ntBASIC16.57■□□□□ 0.24
CTDP1Q9Y5B0 NPM1P43-201ENST00000558669 786 ntBASIC16.57■□□□□ 0.24
CTDP1Q9Y5B0 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC16.57■□□□□ 0.24
CTDP1Q9Y5B0 AP003419.4-201ENST00000616071 517 ntBASIC16.57■□□□□ 0.24
CTDP1Q9Y5B0 AC009560.1-201ENST00000620208 434 ntBASIC16.57■□□□□ 0.24
CTDP1Q9Y5B0 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
CTDP1Q9Y5B0 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CTDP1Q9Y5B0 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CTDP1Q9Y5B0 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CTDP1Q9Y5B0 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CTDP1Q9Y5B0 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CTDP1Q9Y5B0 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CTDP1Q9Y5B0 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CTDP1Q9Y5B0 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 ABCC10-204ENST00000372530 5033 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 HLA-DQB1-202ENST00000399079 1501 ntBASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 UNC13B-202ENST00000378496 5063 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 AC130709.1-201ENST00000484779 1212 ntBASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 POLD4-208ENST00000532830 904 ntTSL 3 BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 MIR6074-201ENST00000612054 107 ntBASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 BRD7P5-201ENST00000299197 1822 ntBASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CTDP1Q9Y5B0 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 PER3-209ENST00000614998 6261 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 NUDT4P2-201ENST00000578341 546 ntBASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 AC144831.1-201ENST00000573312 2656 ntBASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
CTDP1Q9Y5B0 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms