Protein–RNA interactions for Protein: Q96LD4

TRIM47, Tripartite motif-containing protein 47, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47Q96LD4 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 PSMD4P1-201ENST00000433951 1109 ntBASIC16.78■□□□□ 0.28
TRIM47Q96LD4 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 AC024293.1-201ENST00000467930 498 ntBASIC16.78■□□□□ 0.28
TRIM47Q96LD4 RN7SL396P-201ENST00000471086 295 ntBASIC16.78■□□□□ 0.28
TRIM47Q96LD4 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 ETV2-207ENST00000619399 994 ntTSL 5 BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 MPI-203ENST00000535694 1523 ntTSL 2 BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC16.77■□□□□ 0.28
TRIM47Q96LD4 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
TRIM47Q96LD4 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
TRIM47Q96LD4 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC16.77■□□□□ 0.28
TRIM47Q96LD4 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM47Q96LD4 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
TRIM47Q96LD4 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC16.77■□□□□ 0.28
TRIM47Q96LD4 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM47Q96LD4 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM47Q96LD4 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
TRIM47Q96LD4 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM47Q96LD4 FAS-202ENST00000352159 1722 ntTSL 5 BASIC16.77■□□□□ 0.28
TRIM47Q96LD4 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM47Q96LD4 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM47Q96LD4 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
TRIM47Q96LD4 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC16.77■□□□□ 0.28
TRIM47Q96LD4 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
TRIM47Q96LD4 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
TRIM47Q96LD4 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC16.77■□□□□ 0.28
TRIM47Q96LD4 NEU3-207ENST00000534628 746 ntTSL 2 BASIC16.77■□□□□ 0.28
TRIM47Q96LD4 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
TRIM47Q96LD4 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM47Q96LD4 DBP-202ENST00000593500 712 ntTSL 2 BASIC16.77■□□□□ 0.28
TRIM47Q96LD4 AC011247.3-201ENST00000603297 438 ntBASIC16.77■□□□□ 0.28
TRIM47Q96LD4 AP003392.6-201ENST00000607709 325 ntBASIC16.77■□□□□ 0.28
TRIM47Q96LD4 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC16.77■□□□□ 0.28
TRIM47Q96LD4 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.28
TRIM47Q96LD4 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM47Q96LD4 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM47Q96LD4 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
TRIM47Q96LD4 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC16.77■□□□□ 0.27
TRIM47Q96LD4 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC16.77■□□□□ 0.27
TRIM47Q96LD4 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC16.77■□□□□ 0.27
TRIM47Q96LD4 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC16.77■□□□□ 0.27
TRIM47Q96LD4 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM47Q96LD4 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.27
TRIM47Q96LD4 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM47Q96LD4 SALL4P5-201ENST00000419001 1760 ntBASIC16.77■□□□□ 0.27
TRIM47Q96LD4 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC16.77■□□□□ 0.27
TRIM47Q96LD4 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC16.77■□□□□ 0.27
TRIM47Q96LD4 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC16.76■□□□□ 0.27
TRIM47Q96LD4 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC16.76■□□□□ 0.27
TRIM47Q96LD4 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM47Q96LD4 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
TRIM47Q96LD4 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM47Q96LD4 TMBIM7P-202ENST00000641474 1516 ntBASIC16.76■□□□□ 0.27
TRIM47Q96LD4 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM47Q96LD4 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM47Q96LD4 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM47Q96LD4 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM47Q96LD4 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC16.76■□□□□ 0.27
TRIM47Q96LD4 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM47Q96LD4 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
TRIM47Q96LD4 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC16.76■□□□□ 0.27
TRIM47Q96LD4 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM47Q96LD4 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM47Q96LD4 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM47Q96LD4 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM47Q96LD4 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
TRIM47Q96LD4 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM47Q96LD4 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC16.76■□□□□ 0.27
TRIM47Q96LD4 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC16.76■□□□□ 0.27
TRIM47Q96LD4 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM47Q96LD4 GCOM2-201ENST00000509133 1104 ntBASIC16.76■□□□□ 0.27
TRIM47Q96LD4 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC16.76■□□□□ 0.27
TRIM47Q96LD4 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms