Protein–RNA interactions for Protein: Q5XG99

LYSMD4, LysM and putative peptidoglycan-binding domain-containing protein 4, humanhuman

Predictions only

Length 296 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD4Q5XG99 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
LYSMD4Q5XG99 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC13.9□□□□□ -0.18
LYSMD4Q5XG99 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LYSMD4Q5XG99 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LYSMD4Q5XG99 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LYSMD4Q5XG99 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LYSMD4Q5XG99 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LYSMD4Q5XG99 OR2I1P-209ENST00000641730 5365 ntBASIC13.9□□□□□ -0.18
LYSMD4Q5XG99 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
LYSMD4Q5XG99 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
LYSMD4Q5XG99 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
LYSMD4Q5XG99 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 NME6-208ENST00000435684 599 ntTSL 2 BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 BAK1P2-201ENST00000532665 631 ntBASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 F11R-204ENST00000537746 1245 ntTSL 2 BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 KNOP1P1-201ENST00000542108 989 ntBASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 AL627230.2-201ENST00000613254 655 ntBASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 AC232323.1-201ENST00000540724 2099 ntBASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC13.89□□□□□ -0.19
LYSMD4Q5XG99 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 AJ011931.1-201ENST00000618749 2492 ntBASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 RN7SL147P-201ENST00000487345 298 ntBASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 HNRNPA1P5-201ENST00000558213 966 ntBASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 RN7SL556P-201ENST00000582856 298 ntBASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
LYSMD4Q5XG99 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms