Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CLRN1P58418 AC005962.1-201ENST00000584100 773 ntBASIC12.87□□□□□ -0.35
CLRN1P58418 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC12.87□□□□□ -0.35
CLRN1P58418 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC12.87□□□□□ -0.35
CLRN1P58418 AC009542.2-202ENST00000619004 1067 ntBASIC12.87□□□□□ -0.35
CLRN1P58418 AL162426.1-201ENST00000624141 743 ntBASIC12.87□□□□□ -0.35
CLRN1P58418 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CLRN1P58418 SCARB2-215ENST00000639145 4471 ntAPPRIS ALT1 TSL 5 BASIC12.87□□□□□ -0.35
CLRN1P58418 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
CLRN1P58418 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC12.87□□□□□ -0.35
CLRN1P58418 Z83844.1-201ENST00000455236 4904 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
CLRN1P58418 DDC-213ENST00000617822 1809 ntTSL 3 BASIC12.87□□□□□ -0.35
CLRN1P58418 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CLRN1P58418 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CLRN1P58418 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
CLRN1P58418 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
CLRN1P58418 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC12.87□□□□□ -0.35
CLRN1P58418 MROH2A-208ENST00000610772 5324 ntAPPRIS P2 TSL 5 BASIC12.87□□□□□ -0.35
CLRN1P58418 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC12.87□□□□□ -0.35
CLRN1P58418 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC12.87□□□□□ -0.35
CLRN1P58418 SYNGAP1-208ENST00000629380 9862 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
CLRN1P58418 AC010327.5-201ENST00000586923 3061 ntBASIC12.87□□□□□ -0.35
CLRN1P58418 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CLRN1P58418 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CLRN1P58418 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CLRN1P58418 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CLRN1P58418 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC12.86□□□□□ -0.35
CLRN1P58418 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC12.86□□□□□ -0.35
CLRN1P58418 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CLRN1P58418 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CLRN1P58418 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
CLRN1P58418 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC12.86□□□□□ -0.35
CLRN1P58418 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC12.86□□□□□ -0.35
CLRN1P58418 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC12.86□□□□□ -0.35
CLRN1P58418 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC12.86□□□□□ -0.35
CLRN1P58418 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CLRN1P58418 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CLRN1P58418 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CLRN1P58418 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CLRN1P58418 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
CLRN1P58418 TRAK1-201ENST00000327628 5293 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
CLRN1P58418 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CLRN1P58418 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
CLRN1P58418 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
CLRN1P58418 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CLRN1P58418 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC12.86□□□□□ -0.35
CLRN1P58418 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC12.86□□□□□ -0.35
CLRN1P58418 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC12.86□□□□□ -0.35
CLRN1P58418 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC12.86□□□□□ -0.35
CLRN1P58418 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CLRN1P58418 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC12.86□□□□□ -0.35
CLRN1P58418 USB1-203ENST00000539737 1212 ntTSL 2 BASIC12.86□□□□□ -0.35
CLRN1P58418 IFT20-216ENST00000588477 774 ntTSL 5 BASIC12.86□□□□□ -0.35
CLRN1P58418 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC12.86□□□□□ -0.35
CLRN1P58418 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CLRN1P58418 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CLRN1P58418 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC12.86□□□□□ -0.35
CLRN1P58418 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CLRN1P58418 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
CLRN1P58418 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC12.86□□□□□ -0.35
CLRN1P58418 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CLRN1P58418 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CLRN1P58418 SESN3-203ENST00000536441 9558 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
CLRN1P58418 ADAM12-202ENST00000368679 7938 ntAPPRIS P4 TSL 1 (best) BASIC12.86□□□□□ -0.35
CLRN1P58418 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CLRN1P58418 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CLRN1P58418 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC12.86□□□□□ -0.35
CLRN1P58418 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC12.86□□□□□ -0.35
CLRN1P58418 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CLRN1P58418 TNNI1-202ENST00000361379 5413 ntAPPRIS P2 TSL 5 BASIC12.86□□□□□ -0.35
CLRN1P58418 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CLRN1P58418 SON-203ENST00000381679 7860 ntTSL 5 BASIC12.86□□□□□ -0.35
CLRN1P58418 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
CLRN1P58418 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 LDB3-202ENST00000361373 5297 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 ADGRG6-204ENST00000367609 6887 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 LAP3P2-201ENST00000454686 1454 ntBASIC12.85□□□□□ -0.35
CLRN1P58418 AC073957.3-201ENST00000609998 6758 ntBASIC12.85□□□□□ -0.35
CLRN1P58418 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
CLRN1P58418 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
CLRN1P58418 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC12.85□□□□□ -0.35
CLRN1P58418 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC12.85□□□□□ -0.35
CLRN1P58418 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC12.85□□□□□ -0.35
CLRN1P58418 REXO1L6P-201ENST00000603433 1515 ntBASIC12.85□□□□□ -0.35
CLRN1P58418 LINC00384-201ENST00000437721 6852 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 OR8S1-201ENST00000310194 1080 ntBASIC12.85□□□□□ -0.35
CLRN1P58418 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC12.85□□□□□ -0.35
CLRN1P58418 ATP5G2P4-201ENST00000442175 420 ntBASIC12.85□□□□□ -0.35
CLRN1P58418 KLF2P1-201ENST00000447438 1042 ntBASIC12.85□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms