Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC14.21□□□□□ -0.13
COL6A2P12110 AC090386.2-201ENST00000623010 1039 ntBASIC14.21□□□□□ -0.13
COL6A2P12110 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC14.21□□□□□ -0.13
COL6A2P12110 ABCD1P2-201ENST00000429313 1601 ntBASIC14.21□□□□□ -0.13
COL6A2P12110 AL359845.1-201ENST00000458202 1648 ntBASIC14.21□□□□□ -0.13
COL6A2P12110 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A2P12110 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC14.21□□□□□ -0.13
COL6A2P12110 FSTL4-207ENST00000621681 2660 ntTSL 5 BASIC14.21□□□□□ -0.13
COL6A2P12110 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
COL6A2P12110 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC14.21□□□□□ -0.13
COL6A2P12110 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A2P12110 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
COL6A2P12110 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
COL6A2P12110 SLC4A8-205ENST00000535225 2262 ntTSL 2 BASIC14.21□□□□□ -0.14
COL6A2P12110 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC14.21□□□□□ -0.14
COL6A2P12110 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
COL6A2P12110 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
COL6A2P12110 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC14.21□□□□□ -0.14
COL6A2P12110 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC14.21□□□□□ -0.14
COL6A2P12110 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.14
COL6A2P12110 ZNF23-203ENST00000393539 3242 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A2P12110 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A2P12110 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
COL6A2P12110 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A2P12110 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC14.2□□□□□ -0.14
COL6A2P12110 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A2P12110 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A2P12110 AP3M2-202ENST00000396926 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A2P12110 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC14.2□□□□□ -0.14
COL6A2P12110 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A2P12110 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
COL6A2P12110 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
COL6A2P12110 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A2P12110 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC14.2□□□□□ -0.14
COL6A2P12110 TUBB4AP1-201ENST00000450755 1325 ntBASIC14.2□□□□□ -0.14
COL6A2P12110 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A2P12110 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A2P12110 STK3-218ENST00000617590 2485 ntTSL 5 BASIC14.2□□□□□ -0.14
COL6A2P12110 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A2P12110 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A2P12110 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A2P12110 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
COL6A2P12110 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
COL6A2P12110 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A2P12110 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC14.2□□□□□ -0.14
COL6A2P12110 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A2P12110 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A2P12110 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A2P12110 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A2P12110 CMC4-201ENST00000369479 864 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
COL6A2P12110 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A2P12110 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
COL6A2P12110 HMGA1P1-201ENST00000415560 1062 ntBASIC14.2□□□□□ -0.14
COL6A2P12110 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC14.2□□□□□ -0.14
COL6A2P12110 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
COL6A2P12110 AGER-214ENST00000538695 487 ntTSL 2 BASIC14.2□□□□□ -0.14
COL6A2P12110 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A2P12110 POLE2-203ENST00000553805 496 ntTSL 2 BASIC14.2□□□□□ -0.14
COL6A2P12110 RBM8B-201ENST00000555532 525 ntBASIC14.2□□□□□ -0.14
COL6A2P12110 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC14.2□□□□□ -0.14
COL6A2P12110 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC14.2□□□□□ -0.14
COL6A2P12110 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
COL6A2P12110 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
COL6A2P12110 AC008735.3-201ENST00000596646 500 ntBASIC14.2□□□□□ -0.14
COL6A2P12110 MIR6720-201ENST00000611664 98 ntBASIC14.2□□□□□ -0.14
COL6A2P12110 AC244669.2-201ENST00000612320 853 ntBASIC14.2□□□□□ -0.14
COL6A2P12110 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC14.2□□□□□ -0.14
COL6A2P12110 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A2P12110 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
COL6A2P12110 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A2P12110 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC14.2□□□□□ -0.14
COL6A2P12110 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A2P12110 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC14.2□□□□□ -0.14
COL6A2P12110 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A2P12110 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A2P12110 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC14.2□□□□□ -0.14
COL6A2P12110 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A2P12110 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
COL6A2P12110 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
COL6A2P12110 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A2P12110 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A2P12110 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A2P12110 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC14.2□□□□□ -0.14
COL6A2P12110 LINC02486-201ENST00000604157 3000 ntBASIC14.2□□□□□ -0.14
COL6A2P12110 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A2P12110 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A2P12110 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC14.19□□□□□ -0.14
COL6A2P12110 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC14.19□□□□□ -0.14
COL6A2P12110 AL031595.1-201ENST00000623969 4709 ntBASIC14.19□□□□□ -0.14
COL6A2P12110 AC061965.1-201ENST00000560524 1465 ntBASIC14.19□□□□□ -0.14
COL6A2P12110 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A2P12110 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
COL6A2P12110 AHCYP2-201ENST00000430630 1300 ntBASIC14.19□□□□□ -0.14
COL6A2P12110 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A2P12110 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A2P12110 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
COL6A2P12110 TTK-201ENST00000230510 3477 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
COL6A2P12110 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
COL6A2P12110 RUBCNL-201ENST00000378781 3322 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
COL6A2P12110 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms