Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 AC006453.1-201ENST00000636037 1257 ntBASIC14.45□□□□□ -0.1
DKK3Q9UBP4 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 CCT8L1P-201ENST00000465400 1674 ntBASIC14.45□□□□□ -0.1
DKK3Q9UBP4 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 AC015909.3-201ENST00000572855 1794 ntBASIC14.45□□□□□ -0.1
DKK3Q9UBP4 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 KRT8P19-201ENST00000551916 1455 ntBASIC14.44□□□□□ -0.1
DKK3Q9UBP4 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 SENP3-202ENST00000429205 2222 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 BANF1P3-201ENST00000412556 261 ntBASIC14.44□□□□□ -0.1
DKK3Q9UBP4 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 AC026320.2-201ENST00000434379 478 ntBASIC14.44□□□□□ -0.1
DKK3Q9UBP4 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 AC008723.1-201ENST00000506922 207 ntBASIC14.44□□□□□ -0.1
DKK3Q9UBP4 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 FGFR3P5-201ENST00000564496 886 ntBASIC14.44□□□□□ -0.1
DKK3Q9UBP4 AC026803.1-201ENST00000569130 274 ntBASIC14.44□□□□□ -0.1
DKK3Q9UBP4 SKA2-205ENST00000580541 689 ntTSL 3 BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 LINC00552-201ENST00000625151 2579 ntBASIC14.44□□□□□ -0.1
DKK3Q9UBP4 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
DKK3Q9UBP4 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 PARVG-202ENST00000415224 999 ntTSL 2 BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms