Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 AL603764.1-201ENST00000636452 321 ntBASIC13.87□□□□□ -0.19
COL28A1Q2UY09 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 BEND3P1-201ENST00000421591 1944 ntBASIC13.87□□□□□ -0.19
COL28A1Q2UY09 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 KRT18P9-201ENST00000604826 1300 ntBASIC13.87□□□□□ -0.19
COL28A1Q2UY09 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 AC015909.3-201ENST00000572855 1794 ntBASIC13.86□□□□□ -0.19
COL28A1Q2UY09 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 MIR557-201ENST00000385239 98 ntBASIC13.86□□□□□ -0.19
COL28A1Q2UY09 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 AC004522.1-201ENST00000419978 654 ntBASIC13.86□□□□□ -0.19
COL28A1Q2UY09 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 AQP7P5-201ENST00000428759 1049 ntBASIC13.86□□□□□ -0.19
COL28A1Q2UY09 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 AL645933.1-201ENST00000440087 609 ntBASIC13.86□□□□□ -0.19
COL28A1Q2UY09 AQP7P4-201ENST00000447083 1042 ntBASIC13.86□□□□□ -0.19
COL28A1Q2UY09 AQP7P2-201ENST00000453967 1041 ntBASIC13.86□□□□□ -0.19
COL28A1Q2UY09 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 CHTF8-207ENST00000520529 475 ntTSL 2 BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 AC005962.1-201ENST00000584100 773 ntBASIC13.86□□□□□ -0.19
COL28A1Q2UY09 AP005212.2-201ENST00000584979 510 ntBASIC13.86□□□□□ -0.19
COL28A1Q2UY09 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 AC007326.1-201ENST00000604539 458 ntBASIC13.86□□□□□ -0.19
COL28A1Q2UY09 AL157813.1-201ENST00000612996 587 ntBASIC13.86□□□□□ -0.19
COL28A1Q2UY09 AC011471.3-201ENST00000623576 402 ntBASIC13.86□□□□□ -0.19
COL28A1Q2UY09 AQP7P3-201ENST00000624547 1041 ntBASIC13.86□□□□□ -0.19
COL28A1Q2UY09 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 ENPP7P8-202ENST00000527856 1345 ntBASIC13.86□□□□□ -0.19
COL28A1Q2UY09 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL28A1Q2UY09 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 MARS-233ENST00000628866 2583 ntTSL 5 BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 AC244394.1-201ENST00000435000 1665 ntBASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms