Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA1P55317 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA1P55317 MIER1-202ENST00000355977 3595 ntTSL 5 BASIC13.91□□□□□ -0.18
FOXA1P55317 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA1P55317 KIAA1614-201ENST00000367587 3309 ntTSL 2 BASIC13.91□□□□□ -0.18
FOXA1P55317 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA1P55317 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA1P55317 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA1P55317 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA1P55317 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA1P55317 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA1P55317 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA1P55317 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
FOXA1P55317 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA1P55317 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA1P55317 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC13.91□□□□□ -0.18
FOXA1P55317 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA1P55317 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC13.9□□□□□ -0.18
FOXA1P55317 USP39-220ENST00000613444 2161 ntTSL 2 BASIC13.9□□□□□ -0.18
FOXA1P55317 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA1P55317 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA1P55317 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA1P55317 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
FOXA1P55317 PDIA3P1-201ENST00000471856 1510 ntBASIC13.9□□□□□ -0.18
FOXA1P55317 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA1P55317 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA1P55317 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA1P55317 INVS-201ENST00000262456 2968 ntTSL 5 BASIC13.9□□□□□ -0.18
FOXA1P55317 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC13.9□□□□□ -0.18
FOXA1P55317 FOSB-212ENST00000592811 3089 ntTSL 2 BASIC13.9□□□□□ -0.18
FOXA1P55317 KRT17P5-203ENST00000445433 2333 ntTSL 2 BASIC13.9□□□□□ -0.18
FOXA1P55317 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA1P55317 DYNC1I1-202ENST00000359388 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA1P55317 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA1P55317 ELN-209ENST00000380576 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA1P55317 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC13.9□□□□□ -0.18
FOXA1P55317 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA1P55317 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA1P55317 LBX2-201ENST00000341396 886 ntTSL 3 BASIC13.9□□□□□ -0.18
FOXA1P55317 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC13.9□□□□□ -0.18
FOXA1P55317 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
FOXA1P55317 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC13.9□□□□□ -0.18
FOXA1P55317 COX5BP8-201ENST00000416911 349 ntBASIC13.9□□□□□ -0.18
FOXA1P55317 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC13.9□□□□□ -0.18
FOXA1P55317 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC13.9□□□□□ -0.18
FOXA1P55317 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC13.9□□□□□ -0.18
FOXA1P55317 RBM8B-201ENST00000555532 525 ntBASIC13.9□□□□□ -0.18
FOXA1P55317 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC13.9□□□□□ -0.18
FOXA1P55317 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC13.9□□□□□ -0.18
FOXA1P55317 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC13.9□□□□□ -0.18
FOXA1P55317 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC13.9□□□□□ -0.18
FOXA1P55317 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA1P55317 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
FOXA1P55317 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC13.9□□□□□ -0.18
FOXA1P55317 RHOXF1P1-202ENST00000635473 501 ntBASIC13.9□□□□□ -0.18
FOXA1P55317 Z98259.2-201ENST00000641583 609 ntBASIC13.9□□□□□ -0.18
FOXA1P55317 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA1P55317 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC13.9□□□□□ -0.18
FOXA1P55317 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC13.9□□□□□ -0.18
FOXA1P55317 AL591122.2-201ENST00000624125 1853 ntBASIC13.9□□□□□ -0.18
FOXA1P55317 MRPL17-201ENST00000288937 1969 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA1P55317 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC13.9□□□□□ -0.18
FOXA1P55317 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC13.9□□□□□ -0.18
FOXA1P55317 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA1P55317 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC13.9□□□□□ -0.18
FOXA1P55317 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC13.9□□□□□ -0.18
FOXA1P55317 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA1P55317 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
FOXA1P55317 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA1P55317 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
FOXA1P55317 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
FOXA1P55317 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC13.9□□□□□ -0.18
FOXA1P55317 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC13.9□□□□□ -0.18
FOXA1P55317 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA1P55317 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.19
FOXA1P55317 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
FOXA1P55317 CU639417.3-201ENST00000624240 1404 ntBASIC13.9□□□□□ -0.19
FOXA1P55317 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC13.9□□□□□ -0.19
FOXA1P55317 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
FOXA1P55317 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA1P55317 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
FOXA1P55317 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC13.89□□□□□ -0.19
FOXA1P55317 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
FOXA1P55317 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
FOXA1P55317 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
FOXA1P55317 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC13.89□□□□□ -0.19
FOXA1P55317 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA1P55317 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA1P55317 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
FOXA1P55317 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC13.89□□□□□ -0.19
FOXA1P55317 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA1P55317 CCT8L1P-201ENST00000465400 1674 ntBASIC13.89□□□□□ -0.19
FOXA1P55317 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA1P55317 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA1P55317 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC13.89□□□□□ -0.19
FOXA1P55317 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
FOXA1P55317 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA1P55317 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA1P55317 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA1P55317 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms