Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC12.03□□□□□ -0.48
HOXA1P49639 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC12.03□□□□□ -0.48
HOXA1P49639 TREML5P-201ENST00000421694 576 ntBASIC12.03□□□□□ -0.48
HOXA1P49639 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC12.03□□□□□ -0.48
HOXA1P49639 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC12.03□□□□□ -0.48
HOXA1P49639 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC12.03□□□□□ -0.48
HOXA1P49639 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC12.03□□□□□ -0.48
HOXA1P49639 AC114501.2-201ENST00000439631 535 ntBASIC12.03□□□□□ -0.48
HOXA1P49639 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC12.03□□□□□ -0.48
HOXA1P49639 GAPDHP40-201ENST00000505218 1006 ntBASIC12.03□□□□□ -0.48
HOXA1P49639 GLI4-203ENST00000517468 963 ntTSL 5 BASIC12.03□□□□□ -0.48
HOXA1P49639 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC12.03□□□□□ -0.48
HOXA1P49639 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC12.03□□□□□ -0.48
HOXA1P49639 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC12.03□□□□□ -0.48
HOXA1P49639 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC12.03□□□□□ -0.48
HOXA1P49639 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC12.03□□□□□ -0.48
HOXA1P49639 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
HOXA1P49639 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC12.03□□□□□ -0.48
HOXA1P49639 AL049840.4-201ENST00000602422 811 ntBASIC12.03□□□□□ -0.48
HOXA1P49639 AL158211.3-201ENST00000607385 239 ntBASIC12.03□□□□□ -0.48
HOXA1P49639 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
HOXA1P49639 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
HOXA1P49639 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
HOXA1P49639 EPRS-201ENST00000366923 5014 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXA1P49639 IYD-208ENST00000500320 2158 ntTSL 2 BASIC12.03□□□□□ -0.48
HOXA1P49639 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXA1P49639 ALDH18A1-202ENST00000371224 3359 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXA1P49639 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXA1P49639 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC12.03□□□□□ -0.48
HOXA1P49639 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC12.03□□□□□ -0.48
HOXA1P49639 LINC00638-201ENST00000555578 2518 ntBASIC12.03□□□□□ -0.48
HOXA1P49639 OFD1-203ENST00000380567 3736 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
HOXA1P49639 MED24-204ENST00000394128 3479 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXA1P49639 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXA1P49639 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC12.03□□□□□ -0.48
HOXA1P49639 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC12.03□□□□□ -0.48
HOXA1P49639 DLX4-206ENST00000611342 1662 ntBASIC12.03□□□□□ -0.48
HOXA1P49639 C15orf39-202ENST00000394987 4430 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXA1P49639 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
HOXA1P49639 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
HOXA1P49639 AC016582.3-202ENST00000443870 6580 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
HOXA1P49639 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC12.03□□□□□ -0.48
HOXA1P49639 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC12.03□□□□□ -0.48
HOXA1P49639 GRIA4-201ENST00000282499 5508 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
HOXA1P49639 SPOUT1-201ENST00000361256 4286 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXA1P49639 KCNMA1-291ENST00000640834 3664 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.48
HOXA1P49639 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
HOXA1P49639 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
HOXA1P49639 TUBB8P7-202ENST00000564451 2115 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
HOXA1P49639 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
HOXA1P49639 CLK3P2-201ENST00000427566 1453 ntBASIC12.02□□□□□ -0.48
HOXA1P49639 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.48
HOXA1P49639 F2RL3-201ENST00000248076 3473 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
HOXA1P49639 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
HOXA1P49639 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
HOXA1P49639 CDH11-201ENST00000268603 6857 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
HOXA1P49639 TNK2-208ENST00000428187 4235 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
HOXA1P49639 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
HOXA1P49639 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
HOXA1P49639 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
HOXA1P49639 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
HOXA1P49639 EIF3A-201ENST00000369144 6646 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
HOXA1P49639 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
HOXA1P49639 ALDH3A2-201ENST00000176643 3928 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
HOXA1P49639 SFMBT2-204ENST00000397167 8024 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
HOXA1P49639 ST3GAL5-204ENST00000393808 2236 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
HOXA1P49639 TMPRSS13-205ENST00000526090 2592 ntTSL 2 BASIC12.02□□□□□ -0.48
HOXA1P49639 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.48
HOXA1P49639 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
HOXA1P49639 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HOXA1P49639 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC12.02□□□□□ -0.49
HOXA1P49639 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HOXA1P49639 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
HOXA1P49639 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HOXA1P49639 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
HOXA1P49639 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC12.02□□□□□ -0.49
HOXA1P49639 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC12.02□□□□□ -0.49
HOXA1P49639 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
HOXA1P49639 KRT18P13-201ENST00000400056 1290 ntBASIC12.02□□□□□ -0.49
HOXA1P49639 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC12.02□□□□□ -0.49
HOXA1P49639 NUS1P3-201ENST00000423502 862 ntBASIC12.02□□□□□ -0.49
HOXA1P49639 AP000347.1-202ENST00000435868 847 ntBASIC12.02□□□□□ -0.49
HOXA1P49639 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC12.02□□□□□ -0.49
HOXA1P49639 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
HOXA1P49639 FAM86LP-201ENST00000478302 853 ntBASIC12.02□□□□□ -0.49
HOXA1P49639 RPL13AP25-201ENST00000484130 612 ntBASIC12.02□□□□□ -0.49
HOXA1P49639 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.49
HOXA1P49639 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC12.02□□□□□ -0.49
HOXA1P49639 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
HOXA1P49639 LSM12-202ENST00000585388 942 ntTSL 3 BASIC12.02□□□□□ -0.49
HOXA1P49639 NUTM2A-AS1-208ENST00000446751 2394 ntTSL 2 BASIC12.02□□□□□ -0.49
HOXA1P49639 CRY2-202ENST00000443527 4203 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
HOXA1P49639 ALDH1L1-202ENST00000393431 2797 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
HOXA1P49639 TRPM5-201ENST00000155858 3929 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
HOXA1P49639 MYCBP-201ENST00000397572 2818 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HOXA1P49639 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC12.02□□□□□ -0.49
HOXA1P49639 RNF43-208ENST00000584437 5575 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HOXA1P49639 TLN2-202ENST00000472902 2116 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
HOXA1P49639 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC12.02□□□□□ -0.49
HOXA1P49639 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms