Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
NKX2-1P43699 CACNA1G-222ENST00000510366 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
NKX2-1P43699 CACNA1G-227ENST00000513964 6735 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
NKX2-1P43699 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
NKX2-1P43699 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC11.83□□□□□ -0.52
NKX2-1P43699 GATC-203ENST00000551765 4244 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
NKX2-1P43699 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
NKX2-1P43699 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
NKX2-1P43699 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
NKX2-1P43699 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC11.83□□□□□ -0.52
NKX2-1P43699 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC11.83□□□□□ -0.52
NKX2-1P43699 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
NKX2-1P43699 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
NKX2-1P43699 F10-203ENST00000409306 1450 ntTSL 3 BASIC11.83□□□□□ -0.52
NKX2-1P43699 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
NKX2-1P43699 ALDH3A2-201ENST00000176643 3928 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
NKX2-1P43699 CACNA1G-209ENST00000502264 6921 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
NKX2-1P43699 CACNA1G-221ENST00000510115 6912 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
NKX2-1P43699 AC005394.2-201ENST00000592347 3113 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
NKX2-1P43699 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
NKX2-1P43699 TMUB2-215ENST00000592825 2151 ntTSL 3 BASIC11.82□□□□□ -0.52
NKX2-1P43699 KIAA0930-201ENST00000251993 2723 ntTSL 2 BASIC11.82□□□□□ -0.52
NKX2-1P43699 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC11.82□□□□□ -0.52
NKX2-1P43699 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
NKX2-1P43699 LINC00567-201ENST00000569854 3409 ntBASIC11.82□□□□□ -0.52
NKX2-1P43699 EPN2-202ENST00000347697 4664 ntAPPRIS ALT1 TSL 5 BASIC11.82□□□□□ -0.52
NKX2-1P43699 IL11RA-208ENST00000555003 3008 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
NKX2-1P43699 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC11.82□□□□□ -0.52
NKX2-1P43699 AP000437.1-201ENST00000624057 2085 ntBASIC11.82□□□□□ -0.52
NKX2-1P43699 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
NKX2-1P43699 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
NKX2-1P43699 POC5-202ENST00000428202 2229 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
NKX2-1P43699 NUMA1-233ENST00000616538 6998 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
NKX2-1P43699 ACVR1B-202ENST00000415850 1665 ntTSL 2 BASIC11.82□□□□□ -0.52
NKX2-1P43699 RPS27L-201ENST00000330964 6434 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
NKX2-1P43699 DCST2-202ENST00000368424 2392 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
NKX2-1P43699 AC125807.2-201ENST00000513358 3514 ntBASIC11.82□□□□□ -0.52
NKX2-1P43699 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
NKX2-1P43699 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
NKX2-1P43699 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC11.82□□□□□ -0.52
NKX2-1P43699 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC11.82□□□□□ -0.52
NKX2-1P43699 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC11.82□□□□□ -0.52
NKX2-1P43699 AK2P2-201ENST00000439142 405 ntBASIC11.82□□□□□ -0.52
NKX2-1P43699 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC11.82□□□□□ -0.52
NKX2-1P43699 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC11.82□□□□□ -0.52
NKX2-1P43699 AC069120.2-201ENST00000524091 540 ntBASIC11.82□□□□□ -0.52
NKX2-1P43699 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC11.82□□□□□ -0.52
NKX2-1P43699 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC11.82□□□□□ -0.52
NKX2-1P43699 VPS29-207ENST00000549970 818 ntTSL 3 BASIC11.82□□□□□ -0.52
NKX2-1P43699 RARRES2P5-201ENST00000564013 466 ntBASIC11.82□□□□□ -0.52
NKX2-1P43699 SPDYE22P-201ENST00000582158 798 ntBASIC11.82□□□□□ -0.52
NKX2-1P43699 AP001160.2-201ENST00000596071 487 ntBASIC11.82□□□□□ -0.52
NKX2-1P43699 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC11.82□□□□□ -0.52
NKX2-1P43699 AL662799.1-202ENST00000614205 422 ntBASIC11.82□□□□□ -0.52
NKX2-1P43699 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
NKX2-1P43699 URGCP-201ENST00000336086 5658 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
NKX2-1P43699 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
NKX2-1P43699 ARPIN-201ENST00000357484 7591 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
NKX2-1P43699 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
NKX2-1P43699 AC010336.1-201ENST00000539278 4739 ntBASIC11.82□□□□□ -0.52
NKX2-1P43699 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC11.82□□□□□ -0.52
NKX2-1P43699 TMEM100-201ENST00000424486 1747 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
NKX2-1P43699 KIZ-213ENST00000620891 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
NKX2-1P43699 TESMIN-204ENST00000443940 3495 ntTSL 2 BASIC11.82□□□□□ -0.52
NKX2-1P43699 MEST-206ENST00000416162 2158 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
NKX2-1P43699 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
NKX2-1P43699 CARS-214ENST00000529772 2637 ntTSL 2 BASIC11.82□□□□□ -0.52
NKX2-1P43699 MST1R-201ENST00000296474 4536 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
NKX2-1P43699 HNRNPDL-207ENST00000614627 3968 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
NKX2-1P43699 OXR1-202ENST00000312046 4406 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
NKX2-1P43699 BTBD7P1-201ENST00000447253 1453 ntBASIC11.82□□□□□ -0.52
NKX2-1P43699 AC144450.1-201ENST00000366424 1641 ntTSL 2 BASIC11.82□□□□□ -0.52
NKX2-1P43699 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC11.82□□□□□ -0.52
NKX2-1P43699 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
NKX2-1P43699 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC11.82□□□□□ -0.52
NKX2-1P43699 DYNC1I1-202ENST00000359388 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
NKX2-1P43699 CTCFL-208ENST00000432255 2955 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
NKX2-1P43699 PCDHA6-201ENST00000378126 3267 ntBASIC11.82□□□□□ -0.52
NKX2-1P43699 ABCA17P-202ENST00000469908 4188 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
NKX2-1P43699 HTR2C-201ENST00000276198 4751 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
NKX2-1P43699 ZEB2-204ENST00000409487 5361 ntAPPRIS P2 TSL 5 BASIC11.82□□□□□ -0.52
NKX2-1P43699 PEX1-201ENST00000248633 4385 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
NKX2-1P43699 CCDC117-205ENST00000448492 3937 ntTSL 2 BASIC11.81□□□□□ -0.52
NKX2-1P43699 PEG10-205ENST00000612748 2585 ntAPPRIS P5 TSL 5 BASIC11.81□□□□□ -0.52
NKX2-1P43699 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
NKX2-1P43699 PTPRK-204ENST00000368210 5025 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
NKX2-1P43699 AL355102.3-201ENST00000554299 1678 ntBASIC11.81□□□□□ -0.52
NKX2-1P43699 BTBD9-206ENST00000481247 8525 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
NKX2-1P43699 EIF4G1-205ENST00000382330 5129 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
NKX2-1P43699 ANKRD36B-204ENST00000438709 6067 ntTSL 5 BASIC11.81□□□□□ -0.52
NKX2-1P43699 PRR29-202ENST00000412177 3127 ntAPPRIS P3 TSL 2 BASIC11.81□□□□□ -0.52
NKX2-1P43699 AL590440.2-201ENST00000641973 1595 ntBASIC11.81□□□□□ -0.52
NKX2-1P43699 CCND3-215ENST00000511642 2394 ntTSL 2 BASIC11.81□□□□□ -0.52
NKX2-1P43699 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
NKX2-1P43699 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
NKX2-1P43699 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
NKX2-1P43699 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC11.81□□□□□ -0.52
NKX2-1P43699 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
NKX2-1P43699 APOA1-205ENST00000375329 927 ntTSL 2 BASIC11.81□□□□□ -0.52
NKX2-1P43699 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC11.81□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms