Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 TPPP3-205ENST00000564104 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 LINC00552-201ENST00000625151 2579 ntBASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 IL37-204ENST00000352179 709 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 U73169.1-201ENST00000395152 367 ntBASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 CUTA-204ENST00000440279 822 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 HNRNPA3P6-201ENST00000472163 1006 ntBASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 AC011676.3-201ENST00000520606 294 ntTSL 5 BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 AC016582.2-202ENST00000587765 1094 ntBASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 DUT-208ENST00000559540 1441 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 U3.5-201ENST00000363448 216 ntBASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 PYM1-203ENST00000408946 1226 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 FTH1P18-201ENST00000412071 549 ntBASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 RPSAP6-201ENST00000417882 882 ntBASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 AL137244.1-201ENST00000422931 865 ntBASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 AC002127.2-201ENST00000444032 792 ntTSL 3 BASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 AL121894.1-201ENST00000450971 436 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 AC005786.2-201ENST00000592368 369 ntTSL 3 BASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 AC254633.1-201ENST00000606790 345 ntBASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 MIR6125-201ENST00000618986 96 ntBASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 AL139158.3-201ENST00000641212 1562 ntBASIC17.13■□□□□ 0.33
CCDC88AQ3V6T2 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 AC020910.6-201ENST00000623084 1459 ntBASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 XAGE2-201ENST00000286049 618 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 RNA5SP491-201ENST00000362936 118 ntBASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 OR2W2P-201ENST00000406313 909 ntBASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 AC092573.1-201ENST00000433054 884 ntBASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 KRT18P62-201ENST00000446618 1287 ntBASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 TPT1P6-201ENST00000458298 514 ntBASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 AC087071.1-201ENST00000469264 427 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 AC093300.1-201ENST00000510368 1201 ntBASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 BLOC1S5-205ENST00000543936 368 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms