Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 RPS24-214ENST00000613865 538 ntTSL 5 BASIC11.88□□□□□ -0.51
CDX1P47902 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC11.88□□□□□ -0.51
CDX1P47902 LARP4-220ENST00000615080 856 ntTSL 5 BASIC11.88□□□□□ -0.51
CDX1P47902 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC11.88□□□□□ -0.51
CDX1P47902 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC11.88□□□□□ -0.51
CDX1P47902 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC11.88□□□□□ -0.51
CDX1P47902 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC11.88□□□□□ -0.51
CDX1P47902 SLC4A2-201ENST00000392826 3947 ntAPPRIS ALT2 TSL 2 BASIC11.88□□□□□ -0.51
CDX1P47902 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 WARS2-201ENST00000235521 2800 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 ADAMTS5-201ENST00000284987 9056 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 SETD3-204ENST00000436070 2592 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
CDX1P47902 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC11.88□□□□□ -0.51
CDX1P47902 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 TRIM4-203ENST00000355947 3383 ntAPPRIS P4 TSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
CDX1P47902 LOXL4-201ENST00000260702 3653 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 PRR3-202ENST00000376560 2254 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 MAP7-205ENST00000544465 2744 ntAPPRIS ALT2 TSL 2 BASIC11.88□□□□□ -0.51
CDX1P47902 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
CDX1P47902 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
CDX1P47902 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
CDX1P47902 NTRK2-203ENST00000323115 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC11.87□□□□□ -0.51
CDX1P47902 AL133387.2-201ENST00000422661 2222 ntTSL 2 BASIC11.87□□□□□ -0.51
CDX1P47902 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
CDX1P47902 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
CDX1P47902 TJAP1-204ENST00000372449 2695 ntTSL 5 BASIC11.87□□□□□ -0.51
CDX1P47902 TJAP1-205ENST00000372452 2665 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
CDX1P47902 BRPF3-201ENST00000339717 4820 ntTSL 5 BASIC11.87□□□□□ -0.51
CDX1P47902 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
CDX1P47902 NF1-204ENST00000431387 2889 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
CDX1P47902 GRIPAP1-215ENST00000622599 2881 ntTSL 5 BASIC11.87□□□□□ -0.51
CDX1P47902 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
CDX1P47902 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC11.87□□□□□ -0.51
CDX1P47902 AC131212.3-201ENST00000624087 4219 ntBASIC11.87□□□□□ -0.51
CDX1P47902 ADGRA1-201ENST00000392606 3438 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
CDX1P47902 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC11.87□□□□□ -0.51
CDX1P47902 DYNC1LI1-201ENST00000273130 2504 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
CDX1P47902 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC11.87□□□□□ -0.51
CDX1P47902 MPZL2-201ENST00000278937 2620 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
CDX1P47902 KCNN1-201ENST00000222249 3625 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
CDX1P47902 GUK1-206ENST00000366723 845 ntTSL 5 BASIC11.87□□□□□ -0.51
CDX1P47902 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
CDX1P47902 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC11.87□□□□□ -0.51
CDX1P47902 STX1A-203ENST00000395155 783 ntTSL 2 BASIC11.87□□□□□ -0.51
CDX1P47902 AC104457.1-201ENST00000401024 814 ntBASIC11.87□□□□□ -0.51
CDX1P47902 AL139094.1-201ENST00000405549 1188 ntBASIC11.87□□□□□ -0.51
CDX1P47902 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
CDX1P47902 RPS2P32-201ENST00000439199 892 ntBASIC11.87□□□□□ -0.51
CDX1P47902 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC11.87□□□□□ -0.51
CDX1P47902 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
CDX1P47902 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC11.87□□□□□ -0.51
CDX1P47902 AC106760.1-201ENST00000508690 800 ntBASIC11.87□□□□□ -0.51
CDX1P47902 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC11.87□□□□□ -0.51
CDX1P47902 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
CDX1P47902 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC11.87□□□□□ -0.51
CDX1P47902 AC025279.2-201ENST00000569730 653 ntBASIC11.87□□□□□ -0.51
CDX1P47902 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC11.87□□□□□ -0.51
CDX1P47902 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
CDX1P47902 AC145423.3-201ENST00000615987 467 ntBASIC11.87□□□□□ -0.51
CDX1P47902 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
CDX1P47902 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC11.87□□□□□ -0.51
CDX1P47902 AL603764.1-201ENST00000636452 321 ntBASIC11.87□□□□□ -0.51
CDX1P47902 AP002761.4-201ENST00000565433 3361 ntBASIC11.87□□□□□ -0.51
CDX1P47902 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
CDX1P47902 LRRC17-201ENST00000249377 2002 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
CDX1P47902 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
CDX1P47902 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
CDX1P47902 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
CDX1P47902 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
CDX1P47902 CMIP-208ENST00000566462 3512 ntTSL 4 BASIC11.87□□□□□ -0.51
CDX1P47902 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC11.87□□□□□ -0.51
CDX1P47902 MAD2L1-201ENST00000296509 5468 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
CDX1P47902 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
CDX1P47902 MYRIP-203ENST00000425621 2981 ntTSL 2 BASIC11.87□□□□□ -0.51
CDX1P47902 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC11.87□□□□□ -0.51
CDX1P47902 PEG13-201ENST00000631594 5667 ntBASIC11.87□□□□□ -0.51
CDX1P47902 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
CDX1P47902 TRPV1-209ENST00000576351 2525 ntTSL 5 BASIC11.87□□□□□ -0.51
CDX1P47902 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC11.87□□□□□ -0.51
CDX1P47902 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC11.87□□□□□ -0.51
CDX1P47902 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
CDX1P47902 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC11.87□□□□□ -0.51
CDX1P47902 FBLIM1-203ENST00000375771 3498 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
CDX1P47902 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC11.87□□□□□ -0.51
CDX1P47902 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC11.86□□□□□ -0.51
CDX1P47902 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC11.86□□□□□ -0.51
CDX1P47902 NLGN3-206ENST00000612180 3319 ntTSL 5 BASIC11.86□□□□□ -0.51
CDX1P47902 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 AL158070.2-201ENST00000623713 1621 ntBASIC11.86□□□□□ -0.51
CDX1P47902 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC11.86□□□□□ -0.51
CDX1P47902 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 RET-205ENST00000615310 4337 ntTSL 5 BASIC11.86□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms