Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
SOX3P41225 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
SOX3P41225 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
SOX3P41225 MRPL37P1-201ENST00000592451 1337 ntBASIC13.62□□□□□ -0.23
SOX3P41225 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC13.62□□□□□ -0.23
SOX3P41225 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
SOX3P41225 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
SOX3P41225 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
SOX3P41225 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
SOX3P41225 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SOX3P41225 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SOX3P41225 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SOX3P41225 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SOX3P41225 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SOX3P41225 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC13.61□□□□□ -0.23
SOX3P41225 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
SOX3P41225 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SOX3P41225 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
SOX3P41225 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC13.61□□□□□ -0.23
SOX3P41225 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SOX3P41225 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SOX3P41225 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SOX3P41225 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SOX3P41225 RBM38-204ENST00000371219 760 ntTSL 2 BASIC13.61□□□□□ -0.23
SOX3P41225 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC13.61□□□□□ -0.23
SOX3P41225 KRT8P13-201ENST00000463294 1010 ntBASIC13.61□□□□□ -0.23
SOX3P41225 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SOX3P41225 AC022447.6-201ENST00000515522 438 ntBASIC13.61□□□□□ -0.23
SOX3P41225 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC13.61□□□□□ -0.23
SOX3P41225 HNRNPA1P36-201ENST00000521313 955 ntBASIC13.61□□□□□ -0.23
SOX3P41225 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
SOX3P41225 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC13.61□□□□□ -0.23
SOX3P41225 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
SOX3P41225 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SOX3P41225 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SOX3P41225 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SOX3P41225 AL356585.2-201ENST00000625078 2396 ntBASIC13.61□□□□□ -0.23
SOX3P41225 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SOX3P41225 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC13.61□□□□□ -0.23
SOX3P41225 MX1-218ENST00000619682 1980 ntTSL 5 BASIC13.61□□□□□ -0.23
SOX3P41225 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
SOX3P41225 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SOX3P41225 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
SOX3P41225 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SOX3P41225 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
SOX3P41225 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SOX3P41225 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SOX3P41225 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
SOX3P41225 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC13.61□□□□□ -0.23
SOX3P41225 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
SOX3P41225 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
SOX3P41225 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC13.6□□□□□ -0.23
SOX3P41225 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC13.6□□□□□ -0.23
SOX3P41225 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
SOX3P41225 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC13.6□□□□□ -0.23
SOX3P41225 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
SOX3P41225 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC13.6□□□□□ -0.23
SOX3P41225 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
SOX3P41225 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC13.6□□□□□ -0.23
SOX3P41225 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC13.6□□□□□ -0.23
SOX3P41225 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC13.6□□□□□ -0.23
SOX3P41225 CICP12-201ENST00000455801 843 ntBASIC13.6□□□□□ -0.23
SOX3P41225 SERPINA13P-202ENST00000478994 924 ntBASIC13.6□□□□□ -0.23
SOX3P41225 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC13.6□□□□□ -0.23
SOX3P41225 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
SOX3P41225 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 KC6-205ENST00000599934 556 ntTSL 4 BASIC13.6□□□□□ -0.23
SOX3P41225 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 AL023803.2-201ENST00000620080 638 ntBASIC13.6□□□□□ -0.23
SOX3P41225 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC13.6□□□□□ -0.23
SOX3P41225 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC13.6□□□□□ -0.23
SOX3P41225 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
SOX3P41225 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms