Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 TEX33-203ENST00000405091 1149 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
BRCA1P38398 GRP-202ENST00000420468 579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
BRCA1P38398 HDHD5-AS1-202ENST00000431923 616 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
BRCA1P38398 AC105443.1-201ENST00000433754 712 ntBASIC16.71■□□□□ 0.27
BRCA1P38398 AC007881.1-201ENST00000437460 187 ntBASIC16.71■□□□□ 0.27
BRCA1P38398 AP002856.3-201ENST00000441665 635 ntTSL 3 BASIC16.71■□□□□ 0.27
BRCA1P38398 PRDX3P2-201ENST00000447051 611 ntBASIC16.71■□□□□ 0.27
BRCA1P38398 PDCD2-205ENST00000537445 1114 ntTSL 3 BASIC16.71■□□□□ 0.27
BRCA1P38398 PEX11A-204ENST00000561224 529 ntTSL 4 BASIC16.71■□□□□ 0.27
BRCA1P38398 POU5F1-207ENST00000606567 1236 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
BRCA1P38398 AC092687.3-201ENST00000606907 393 ntTSL 5 BASIC16.71■□□□□ 0.27
BRCA1P38398 AL590094.1-206ENST00000635959 478 ntTSL 5 BASIC16.71■□□□□ 0.27
BRCA1P38398 AL590094.1-209ENST00000637260 499 ntTSL 5 BASIC16.71■□□□□ 0.27
BRCA1P38398 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC16.71■□□□□ 0.27
BRCA1P38398 AC007431.1-201ENST00000578662 1412 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
BRCA1P38398 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
BRCA1P38398 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
BRCA1P38398 SMUG1-220ENST00000513838 2119 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
BRCA1P38398 PRMT5-202ENST00000324366 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
BRCA1P38398 IGHE-202ENST00000641420 1485 ntAPPRIS P5 BASIC16.71■□□□□ 0.27
BRCA1P38398 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
BRCA1P38398 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
BRCA1P38398 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
BRCA1P38398 AL031056.1-202ENST00000635954 2193 ntTSL 5 BASIC16.71■□□□□ 0.27
BRCA1P38398 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
BRCA1P38398 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC16.71■□□□□ 0.27
BRCA1P38398 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
BRCA1P38398 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
BRCA1P38398 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
BRCA1P38398 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
BRCA1P38398 RANGRF-201ENST00000226105 1009 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
BRCA1P38398 OR52N1-201ENST00000317078 963 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
BRCA1P38398 VGLL1-201ENST00000370634 1215 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
BRCA1P38398 TATDN3-208ENST00000526997 794 ntTSL 3 BASIC16.71■□□□□ 0.27
BRCA1P38398 TATDN3-213ENST00000531963 1291 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
BRCA1P38398 AC133555.4-201ENST00000569081 152 ntBASIC16.71■□□□□ 0.27
BRCA1P38398 AC005609.1-201ENST00000625195 617 ntTSL 5 BASIC16.71■□□□□ 0.27
BRCA1P38398 GABARAPL1-219ENST00000629504 379 ntTSL 4 BASIC16.71■□□□□ 0.27
BRCA1P38398 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.27
BRCA1P38398 HLA-DQA1-201ENST00000343139 1591 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
BRCA1P38398 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC16.71■□□□□ 0.27
BRCA1P38398 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.26
BRCA1P38398 SPAG8-202ENST00000396638 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
BRCA1P38398 NME1-209ENST00000511355 1645 ntTSL 5 BASIC16.71■□□□□ 0.26
BRCA1P38398 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.26
BRCA1P38398 BX640514.1-201ENST00000583223 1918 ntBASIC16.71■□□□□ 0.26
BRCA1P38398 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16.7■□□□□ 0.26
BRCA1P38398 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
BRCA1P38398 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
BRCA1P38398 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC16.7■□□□□ 0.26
BRCA1P38398 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC16.7■□□□□ 0.26
BRCA1P38398 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
BRCA1P38398 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
BRCA1P38398 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
BRCA1P38398 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
BRCA1P38398 CDK7-201ENST00000256443 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
BRCA1P38398 LSM2-208ENST00000375661 876 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
BRCA1P38398 NAT8B-201ENST00000377712 765 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
BRCA1P38398 BTF3-202ENST00000380591 1237 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
BRCA1P38398 MACROD2-204ENST00000407045 727 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
BRCA1P38398 RPSAP61-201ENST00000412542 878 ntBASIC16.7■□□□□ 0.26
BRCA1P38398 FHIT-205ENST00000476844 1033 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
BRCA1P38398 AACSP1-202ENST00000521412 1095 ntBASIC16.7■□□□□ 0.26
BRCA1P38398 TRPM1-210ENST00000559179 1002 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
BRCA1P38398 AC012087.1-201ENST00000608068 809 ntTSL 5 BASIC16.7■□□□□ 0.26
BRCA1P38398 AC245369.8-201ENST00000636589 306 ntBASIC16.7■□□□□ 0.26
BRCA1P38398 PAX6-247ENST00000638965 979 ntTSL 5 BASIC16.7■□□□□ 0.26
BRCA1P38398 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC16.7■□□□□ 0.26
BRCA1P38398 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
BRCA1P38398 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
BRCA1P38398 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
BRCA1P38398 COPS5-203ENST00000517736 1621 ntTSL 5 BASIC16.7■□□□□ 0.26
BRCA1P38398 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
BRCA1P38398 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.7■□□□□ 0.26
BRCA1P38398 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
BRCA1P38398 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
BRCA1P38398 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC16.7■□□□□ 0.26
BRCA1P38398 AC005519.2-201ENST00000554532 1367 ntTSL 4 BASIC16.7■□□□□ 0.26
BRCA1P38398 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
BRCA1P38398 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
BRCA1P38398 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.69■□□□□ 0.26
BRCA1P38398 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
BRCA1P38398 CTLA4-201ENST00000295854 525 ntTSL 5 BASIC16.69■□□□□ 0.26
BRCA1P38398 IQCF1-201ENST00000310914 695 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
BRCA1P38398 FAM86FP-201ENST00000338711 969 ntBASIC16.69■□□□□ 0.26
BRCA1P38398 MUC1-207ENST00000368392 1032 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
BRCA1P38398 MUC1-208ENST00000368393 937 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
BRCA1P38398 FAM178B-201ENST00000393526 1004 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
BRCA1P38398 GSG1L2-201ENST00000399363 882 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
BRCA1P38398 RPL35P1-201ENST00000450819 370 ntBASIC16.69■□□□□ 0.26
BRCA1P38398 MUC1-213ENST00000462215 1189 ntTSL 2 BASIC16.69■□□□□ 0.26
BRCA1P38398 RN7SL789P-201ENST00000478944 293 ntBASIC16.69■□□□□ 0.26
BRCA1P38398 AL157871.2-201ENST00000556212 552 ntTSL 3 BASIC16.69■□□□□ 0.26
BRCA1P38398 NEMF-210ENST00000556672 590 ntTSL 2 BASIC16.69■□□□□ 0.26
BRCA1P38398 AL390726.3-201ENST00000567428 635 ntTSL 5 BASIC16.69■□□□□ 0.26
BRCA1P38398 INCA1-202ENST00000574617 1260 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
BRCA1P38398 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC16.69■□□□□ 0.26
BRCA1P38398 BCAS4-206ENST00000609336 787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
BRCA1P38398 AC245427.1-201ENST00000633705 760 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
BRCA1P38398 AC005906.2-208ENST00000638655 1286 ntTSL 5 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 213.6 ms