Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC13.78□□□□□ -0.2
MSX2P35548 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC13.78□□□□□ -0.2
MSX2P35548 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC13.78□□□□□ -0.2
MSX2P35548 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC13.78□□□□□ -0.2
MSX2P35548 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC13.78□□□□□ -0.2
MSX2P35548 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
MSX2P35548 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC13.78□□□□□ -0.2
MSX2P35548 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
MSX2P35548 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX2P35548 F10-203ENST00000409306 1450 ntTSL 3 BASIC13.78□□□□□ -0.2
MSX2P35548 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX2P35548 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
MSX2P35548 CNTLN-201ENST00000380641 4871 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
MSX2P35548 INPP5J-201ENST00000331075 3347 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
MSX2P35548 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX2P35548 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
MSX2P35548 FAM78A-203ENST00000372271 3966 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX2P35548 KCNMA1-210ENST00000404771 4014 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
MSX2P35548 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC13.78□□□□□ -0.2
MSX2P35548 DAXX-213ENST00000620164 2462 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
MSX2P35548 GTF2F1-201ENST00000394456 2731 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
MSX2P35548 CATSPERE-203ENST00000366534 3333 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.2
MSX2P35548 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC13.77□□□□□ -0.2
MSX2P35548 AGPAT3-202ENST00000327505 3589 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
MSX2P35548 AGPAT3-204ENST00000398061 3595 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
MSX2P35548 PCMTD1-208ENST00000544451 3697 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
MSX2P35548 KCNMA1-291ENST00000640834 3664 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.2
MSX2P35548 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.2
MSX2P35548 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
MSX2P35548 ERAL1-201ENST00000254928 1925 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
MSX2P35548 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
MSX2P35548 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
MSX2P35548 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
MSX2P35548 ATG4C-201ENST00000317868 2938 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
MSX2P35548 DISC1-206ENST00000366637 6848 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
MSX2P35548 TRIT1-202ENST00000372818 2034 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
MSX2P35548 TTC14-202ENST00000382584 2274 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
MSX2P35548 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
MSX2P35548 ASB3-204ENST00000406687 2205 ntTSL 2 BASIC13.77□□□□□ -0.21
MSX2P35548 TREML5P-201ENST00000421694 576 ntBASIC13.77□□□□□ -0.21
MSX2P35548 TSSK5P-201ENST00000423978 907 ntBASIC13.77□□□□□ -0.21
MSX2P35548 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC13.77□□□□□ -0.21
MSX2P35548 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC13.77□□□□□ -0.21
MSX2P35548 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC13.77□□□□□ -0.21
MSX2P35548 AL021155.1-201ENST00000438808 2637 ntBASIC13.77□□□□□ -0.21
MSX2P35548 PRR26-202ENST00000441152 2251 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
MSX2P35548 CNN2P2-201ENST00000443536 909 ntBASIC13.77□□□□□ -0.21
MSX2P35548 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC13.77□□□□□ -0.21
MSX2P35548 CNN2P3-201ENST00000450201 906 ntBASIC13.77□□□□□ -0.21
MSX2P35548 CARS-AS1-201ENST00000499962 2664 ntTSL 2 BASIC13.77□□□□□ -0.21
MSX2P35548 NPNT-211ENST00000506666 2187 ntTSL 2 BASIC13.77□□□□□ -0.21
MSX2P35548 SERPINH1-205ENST00000525876 2283 ntTSL 2 BASIC13.77□□□□□ -0.21
MSX2P35548 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC13.77□□□□□ -0.21
MSX2P35548 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC13.77□□□□□ -0.21
MSX2P35548 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
MSX2P35548 AL355102.3-201ENST00000554299 1678 ntBASIC13.77□□□□□ -0.21
MSX2P35548 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC13.77□□□□□ -0.21
MSX2P35548 AC140878.1-201ENST00000565277 250 ntBASIC13.77□□□□□ -0.21
MSX2P35548 USP31-203ENST00000567975 2142 ntTSL 2 BASIC13.77□□□□□ -0.21
MSX2P35548 IFT20-206ENST00000578122 834 ntTSL 2 BASIC13.77□□□□□ -0.21
MSX2P35548 IFT20-208ENST00000578985 831 ntTSL 3 BASIC13.77□□□□□ -0.21
MSX2P35548 BRI3BPP1-201ENST00000594224 787 ntBASIC13.77□□□□□ -0.21
MSX2P35548 KLK3-207ENST00000595952 969 ntTSL 3 BASIC13.77□□□□□ -0.21
MSX2P35548 AC008738.7-201ENST00000609744 511 ntBASIC13.77□□□□□ -0.21
MSX2P35548 INTS4P2-202ENST00000614726 2019 ntBASIC13.77□□□□□ -0.21
MSX2P35548 AL136317.3-201ENST00000618497 906 ntBASIC13.77□□□□□ -0.21
MSX2P35548 AC139530.3-201ENST00000620344 690 ntBASIC13.77□□□□□ -0.21
MSX2P35548 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
MSX2P35548 AL590440.2-201ENST00000641973 1595 ntBASIC13.77□□□□□ -0.21
MSX2P35548 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
MSX2P35548 RBM47-201ENST00000295971 4056 ntAPPRIS ALT1 TSL 5 BASIC13.77□□□□□ -0.21
MSX2P35548 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
MSX2P35548 PGBD1-201ENST00000259883 3100 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
MSX2P35548 ADAM8-201ENST00000415217 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
MSX2P35548 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
MSX2P35548 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
MSX2P35548 XRCC6-201ENST00000359308 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
MSX2P35548 OS9-201ENST00000257966 2505 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
MSX2P35548 SPOUT1-201ENST00000361256 4286 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX2P35548 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
MSX2P35548 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC13.76□□□□□ -0.21
MSX2P35548 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX2P35548 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX2P35548 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC13.76□□□□□ -0.21
MSX2P35548 ELN-211ENST00000414324 3139 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
MSX2P35548 AMT-232ENST00000636199 1546 ntTSL 5 BASIC13.76□□□□□ -0.21
MSX2P35548 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX2P35548 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
MSX2P35548 MKRN5P-201ENST00000445263 1467 ntBASIC13.76□□□□□ -0.21
MSX2P35548 BTBD7P1-201ENST00000447253 1453 ntBASIC13.76□□□□□ -0.21
MSX2P35548 NCSTN-201ENST00000294785 2936 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX2P35548 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
MSX2P35548 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
MSX2P35548 DLGAP3-202ENST00000373347 3856 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
MSX2P35548 DYNC1I2-203ENST00000409197 2572 ntAPPRIS P4 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX2P35548 DYNC1I2-206ENST00000409773 2583 ntTSL 2 BASIC13.76□□□□□ -0.21
MSX2P35548 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX2P35548 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
MSX2P35548 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
MSX2P35548 AC107890.1-201ENST00000422478 521 ntBASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms