Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC16.63■□□□□ 0.25
COL4A5P29400 AL031056.1-202ENST00000635954 2193 ntTSL 5 BASIC16.63■□□□□ 0.25
COL4A5P29400 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC16.63■□□□□ 0.25
COL4A5P29400 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL4A5P29400 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL4A5P29400 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
COL4A5P29400 KRT8P42-201ENST00000405771 1399 ntBASIC16.63■□□□□ 0.25
COL4A5P29400 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL4A5P29400 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
COL4A5P29400 AC093462.1-201ENST00000621167 1683 ntBASIC16.63■□□□□ 0.25
COL4A5P29400 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC16.63■□□□□ 0.25
COL4A5P29400 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL4A5P29400 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
COL4A5P29400 GUCY2EP-203ENST00000531117 1918 ntBASIC16.63■□□□□ 0.25
COL4A5P29400 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL4A5P29400 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
COL4A5P29400 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL4A5P29400 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL4A5P29400 RIBC1-202ENST00000375327 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A5P29400 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
COL4A5P29400 AC000077.1-201ENST00000420012 953 ntBASIC16.62■□□□□ 0.25
COL4A5P29400 GHRL-206ENST00000430179 856 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A5P29400 AC005736.3-201ENST00000571169 244 ntTSL 5 BASIC16.62■□□□□ 0.25
COL4A5P29400 AC090617.4-201ENST00000572404 422 ntTSL 3 BASIC16.62■□□□□ 0.25
COL4A5P29400 RN7SL134P-201ENST00000579756 303 ntBASIC16.62■□□□□ 0.25
COL4A5P29400 LINC02081-201ENST00000586185 877 ntTSL 3 BASIC16.62■□□□□ 0.25
COL4A5P29400 AC083798.2-202ENST00000609469 553 ntTSL 4 BASIC16.62■□□□□ 0.25
COL4A5P29400 Metazoa_SRP.156-201ENST00000622344 262 ntBASIC16.62■□□□□ 0.25
COL4A5P29400 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
COL4A5P29400 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
COL4A5P29400 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
COL4A5P29400 LINC00675-202ENST00000581851 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A5P29400 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A5P29400 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
COL4A5P29400 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A5P29400 SAP18-201ENST00000382533 2298 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A5P29400 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
COL4A5P29400 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
COL4A5P29400 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A5P29400 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A5P29400 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A5P29400 TUBB2A-201ENST00000333628 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A5P29400 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
COL4A5P29400 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC16.62■□□□□ 0.25
COL4A5P29400 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A5P29400 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A5P29400 S100B-201ENST00000291700 877 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A5P29400 CSRP2-201ENST00000311083 943 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A5P29400 S100A2-202ENST00000368708 998 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A5P29400 KCNK15-AS1-202ENST00000427303 528 ntTSL 5 BASIC16.62■□□□□ 0.25
COL4A5P29400 TTTY18-201ENST00000438677 221 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A5P29400 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC16.62■□□□□ 0.25
COL4A5P29400 AL353653.1-201ENST00000452336 638 ntTSL 2 BASIC16.62■□□□□ 0.25
COL4A5P29400 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC16.62■□□□□ 0.25
COL4A5P29400 CSRP2-203ENST00000547435 632 ntTSL 2 BASIC16.62■□□□□ 0.25
COL4A5P29400 AC009065.4-201ENST00000563734 543 ntTSL 3 BASIC16.62■□□□□ 0.25
COL4A5P29400 ABCC6P1-203ENST00000565566 1170 ntBASIC16.62■□□□□ 0.25
COL4A5P29400 RN7SL480P-201ENST00000581481 294 ntBASIC16.62■□□□□ 0.25
COL4A5P29400 AC003070.1-201ENST00000592389 457 ntTSL 2 BASIC16.62■□□□□ 0.25
COL4A5P29400 ITGB2-AS1-204ENST00000609592 482 ntTSL 5 BASIC16.62■□□□□ 0.25
COL4A5P29400 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A5P29400 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
COL4A5P29400 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A5P29400 AC092384.3-202ENST00000564646 2873 ntBASIC16.62■□□□□ 0.25
COL4A5P29400 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A5P29400 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A5P29400 PSMC5-212ENST00000581882 1474 ntTSL 5 BASIC16.61■□□□□ 0.25
COL4A5P29400 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
COL4A5P29400 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC16.61■□□□□ 0.25
COL4A5P29400 RAPGEFL1-202ENST00000456989 1582 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A5P29400 EFHB-202ENST00000344838 2389 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
COL4A5P29400 AC011477.7-201ENST00000617163 1440 ntBASIC16.61■□□□□ 0.25
COL4A5P29400 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC16.61■□□□□ 0.25
COL4A5P29400 EXOSC7-201ENST00000265564 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A5P29400 ZWINT-202ENST00000361148 807 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
COL4A5P29400 ARAF-202ENST00000377039 1271 ntTSL 2 BASIC16.61■□□□□ 0.25
COL4A5P29400 IGLV3-9-201ENST00000390316 461 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
COL4A5P29400 CDKN2A-AS1-201ENST00000441769 823 ntBASIC16.61■□□□□ 0.25
COL4A5P29400 AL137078.1-201ENST00000446280 404 ntTSL 2 BASIC16.61■□□□□ 0.25
COL4A5P29400 AC098820.2-201ENST00000457694 666 ntTSL 5 BASIC16.61■□□□□ 0.25
COL4A5P29400 AC104212.2-201ENST00000478813 628 ntBASIC16.61■□□□□ 0.25
COL4A5P29400 AL080250.1-203ENST00000607799 747 ntTSL 2 BASIC16.61■□□□□ 0.25
COL4A5P29400 LINC01012-203ENST00000628762 743 ntTSL 5 BASIC16.61■□□□□ 0.25
COL4A5P29400 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A5P29400 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A5P29400 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
COL4A5P29400 SERHL2-201ENST00000327678 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A5P29400 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A5P29400 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.61■□□□□ 0.25
COL4A5P29400 PAX5-204ENST00000377852 1472 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A5P29400 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A5P29400 HORMAD1-202ENST00000361824 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A5P29400 MKRN2-203ENST00000448482 1679 ntTSL 5 BASIC16.61■□□□□ 0.25
COL4A5P29400 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
COL4A5P29400 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC16.61■□□□□ 0.25
COL4A5P29400 PRMT5-202ENST00000324366 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A5P29400 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC16.6■□□□□ 0.25
COL4A5P29400 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
COL4A5P29400 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC16.6■□□□□ 0.25
COL4A5P29400 LINC01922-202ENST00000567168 1704 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms