Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AC131206.1-201ENST00000538078 1211 ntBASIC12.32□□□□□ -0.44
SDCBPO00560 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SDCBPO00560 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC12.32□□□□□ -0.44
SDCBPO00560 AC004466.1-201ENST00000599515 1080 ntBASIC12.32□□□□□ -0.44
SDCBPO00560 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SDCBPO00560 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC12.32□□□□□ -0.44
SDCBPO00560 NTNG1-204ENST00000370067 4628 ntTSL 5 BASIC12.32□□□□□ -0.44
SDCBPO00560 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
SDCBPO00560 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SDCBPO00560 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SDCBPO00560 GTF2IRD2-201ENST00000451013 3558 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SDCBPO00560 TP73-213ENST00000604479 1623 ntTSL 5 BASIC12.32□□□□□ -0.44
SDCBPO00560 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SDCBPO00560 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SDCBPO00560 ACO1-203ENST00000541043 3618 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
SDCBPO00560 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SDCBPO00560 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC12.32□□□□□ -0.44
SDCBPO00560 TBC1D24-201ENST00000293970 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SDCBPO00560 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SDCBPO00560 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SDCBPO00560 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC12.32□□□□□ -0.44
SDCBPO00560 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SDCBPO00560 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
SDCBPO00560 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SDCBPO00560 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC12.31□□□□□ -0.44
SDCBPO00560 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SDCBPO00560 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
SDCBPO00560 OLFML2A-203ENST00000373580 6425 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
SDCBPO00560 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SDCBPO00560 LARP4-201ENST00000293618 6296 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SDCBPO00560 CACNA1G-233ENST00000515765 6981 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
SDCBPO00560 AC005014.1-201ENST00000432006 2976 ntBASIC12.31□□□□□ -0.44
SDCBPO00560 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SDCBPO00560 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SDCBPO00560 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC12.31□□□□□ -0.44
SDCBPO00560 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SDCBPO00560 TJAP1-208ENST00000438588 2716 ntTSL 5 BASIC12.31□□□□□ -0.44
SDCBPO00560 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
SDCBPO00560 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SDCBPO00560 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SDCBPO00560 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC12.31□□□□□ -0.44
SDCBPO00560 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
SDCBPO00560 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SDCBPO00560 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
SDCBPO00560 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
SDCBPO00560 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC12.31□□□□□ -0.44
SDCBPO00560 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC12.31□□□□□ -0.44
SDCBPO00560 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
SDCBPO00560 ACTG1P3-201ENST00000431775 1114 ntBASIC12.31□□□□□ -0.44
SDCBPO00560 RN7SL752P-201ENST00000463779 287 ntBASIC12.31□□□□□ -0.44
SDCBPO00560 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
SDCBPO00560 AC011495.1-201ENST00000498085 584 ntBASIC12.31□□□□□ -0.44
SDCBPO00560 AC068587.3-201ENST00000526613 355 ntBASIC12.31□□□□□ -0.44
SDCBPO00560 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
SDCBPO00560 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC12.31□□□□□ -0.44
SDCBPO00560 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC12.31□□□□□ -0.44
SDCBPO00560 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC12.31□□□□□ -0.44
SDCBPO00560 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC12.31□□□□□ -0.44
SDCBPO00560 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
SDCBPO00560 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
SDCBPO00560 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC12.31□□□□□ -0.44
SDCBPO00560 AC010319.3-201ENST00000597028 470 ntBASIC12.31□□□□□ -0.44
SDCBPO00560 AC145423.3-201ENST00000615987 467 ntBASIC12.31□□□□□ -0.44
SDCBPO00560 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
SDCBPO00560 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
SDCBPO00560 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SDCBPO00560 UNC5CL-201ENST00000244565 3136 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SDCBPO00560 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SDCBPO00560 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SDCBPO00560 ANKRD20A19P-202ENST00000442969 2796 ntTSL 2 BASIC12.31□□□□□ -0.44
SDCBPO00560 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SDCBPO00560 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC12.31□□□□□ -0.44
SDCBPO00560 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SDCBPO00560 ABCB9-203ENST00000346530 3399 ntTSL 5 BASIC12.31□□□□□ -0.44
SDCBPO00560 TRPV1-206ENST00000571088 4105 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SDCBPO00560 GOLGA7B-203ENST00000596005 6378 ntTSL 2 BASIC12.31□□□□□ -0.44
SDCBPO00560 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SDCBPO00560 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
SDCBPO00560 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
SDCBPO00560 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
SDCBPO00560 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SDCBPO00560 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SDCBPO00560 MSTO2P-201ENST00000314835 1709 ntBASIC12.31□□□□□ -0.44
SDCBPO00560 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
SDCBPO00560 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
SDCBPO00560 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SDCBPO00560 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SDCBPO00560 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC12.3□□□□□ -0.44
SDCBPO00560 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SDCBPO00560 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC12.3□□□□□ -0.44
SDCBPO00560 ABLIM2-213ENST00000514025 2974 ntTSL 2 BASIC12.3□□□□□ -0.44
SDCBPO00560 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SDCBPO00560 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC12.3□□□□□ -0.44
SDCBPO00560 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SDCBPO00560 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC12.3□□□□□ -0.44
SDCBPO00560 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
SDCBPO00560 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SDCBPO00560 AC104129.1-202ENST00000480694 4481 ntTSL 2 BASIC12.3□□□□□ -0.44
SDCBPO00560 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SDCBPO00560 AGL-203ENST00000361915 7368 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms