Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 AL691403.2-201ENST00000618460 490 ntBASIC11.86□□□□□ -0.51
NKX2-1P43699 AL136317.3-201ENST00000618497 906 ntBASIC11.86□□□□□ -0.51
NKX2-1P43699 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC11.86□□□□□ -0.51
NKX2-1P43699 SUN2-201ENST00000405018 4022 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
NKX2-1P43699 TRPM4-201ENST00000252826 4109 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
NKX2-1P43699 KCNS2-202ENST00000521839 4340 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
NKX2-1P43699 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
NKX2-1P43699 AC024075.2-201ENST00000598112 1473 ntBASIC11.86□□□□□ -0.51
NKX2-1P43699 DLX4-206ENST00000611342 1662 ntBASIC11.86□□□□□ -0.51
NKX2-1P43699 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
NKX2-1P43699 MAOA-204ENST00000542639 5438 ntTSL 2 BASIC11.86□□□□□ -0.51
NKX2-1P43699 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
NKX2-1P43699 CRISPLD2-209ENST00000567845 2178 ntAPPRIS ALT1 TSL 5 BASIC11.86□□□□□ -0.51
NKX2-1P43699 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC11.86□□□□□ -0.51
NKX2-1P43699 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
NKX2-1P43699 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC11.86□□□□□ -0.51
NKX2-1P43699 ZNF202-207ENST00000530393 3564 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
NKX2-1P43699 LSM14A-203ENST00000544216 3596 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
NKX2-1P43699 RRBP1-202ENST00000360807 3727 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
NKX2-1P43699 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
NKX2-1P43699 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC11.86□□□□□ -0.51
NKX2-1P43699 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC11.86□□□□□ -0.51
NKX2-1P43699 PLOD2-202ENST00000360060 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
NKX2-1P43699 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
NKX2-1P43699 KLHL32-206ENST00000544166 2864 ntTSL 2 BASIC11.85□□□□□ -0.51
NKX2-1P43699 DHX38-201ENST00000268482 4608 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
NKX2-1P43699 ST5-256ENST00000534127 4545 ntAPPRIS P4 TSL 1 (best) BASIC11.85□□□□□ -0.51
NKX2-1P43699 NEK4-202ENST00000383721 2576 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
NKX2-1P43699 PRMT7-201ENST00000339507 4238 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
NKX2-1P43699 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC11.85□□□□□ -0.51
NKX2-1P43699 LIMK1-208ENST00000538333 2170 ntTSL 2 BASIC11.85□□□□□ -0.51
NKX2-1P43699 ADCY7-202ENST00000394697 6213 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
NKX2-1P43699 CAMKV-209ENST00000477224 3314 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
NKX2-1P43699 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
NKX2-1P43699 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
NKX2-1P43699 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
NKX2-1P43699 SPG11-202ENST00000427534 6935 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
NKX2-1P43699 ZNF419-202ENST00000347466 3654 ntAPPRIS P3 TSL 2 BASIC11.85□□□□□ -0.51
NKX2-1P43699 MKNK1-203ENST00000371945 2618 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
NKX2-1P43699 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC11.85□□□□□ -0.51
NKX2-1P43699 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC11.85□□□□□ -0.51
NKX2-1P43699 MATN1-AS1-201ENST00000414532 3925 ntTSL 2 BASIC11.85□□□□□ -0.51
NKX2-1P43699 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
NKX2-1P43699 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC11.85□□□□□ -0.51
NKX2-1P43699 RNU1-114P-201ENST00000365297 166 ntBASIC11.85□□□□□ -0.51
NKX2-1P43699 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
NKX2-1P43699 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
NKX2-1P43699 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC11.85□□□□□ -0.51
NKX2-1P43699 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
NKX2-1P43699 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC11.85□□□□□ -0.51
NKX2-1P43699 TSEN15P1-201ENST00000423257 515 ntBASIC11.85□□□□□ -0.51
NKX2-1P43699 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC11.85□□□□□ -0.51
NKX2-1P43699 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
NKX2-1P43699 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC11.85□□□□□ -0.51
NKX2-1P43699 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC11.85□□□□□ -0.51
NKX2-1P43699 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC11.85□□□□□ -0.51
NKX2-1P43699 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC11.85□□□□□ -0.51
NKX2-1P43699 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC11.85□□□□□ -0.51
NKX2-1P43699 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC11.85□□□□□ -0.51
NKX2-1P43699 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC11.85□□□□□ -0.51
NKX2-1P43699 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC11.85□□□□□ -0.51
NKX2-1P43699 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC11.85□□□□□ -0.51
NKX2-1P43699 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC11.85□□□□□ -0.51
NKX2-1P43699 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC11.85□□□□□ -0.51
NKX2-1P43699 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
NKX2-1P43699 AC007431.3-201ENST00000623221 587 ntBASIC11.85□□□□□ -0.51
NKX2-1P43699 AP001002.3-201ENST00000623482 206 ntBASIC11.85□□□□□ -0.51
NKX2-1P43699 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC11.85□□□□□ -0.51
NKX2-1P43699 AL022313.4-201ENST00000562756 2046 ntBASIC11.85□□□□□ -0.51
NKX2-1P43699 LAMA3-202ENST00000313654 10661 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
NKX2-1P43699 ACSL4-202ENST00000348502 5032 ntAPPRIS ALT1 TSL 1 (best) BASIC11.85□□□□□ -0.51
NKX2-1P43699 SGK2-203ENST00000373092 1906 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
NKX2-1P43699 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
NKX2-1P43699 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC11.85□□□□□ -0.51
NKX2-1P43699 RRBP1-201ENST00000246043 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
NKX2-1P43699 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
NKX2-1P43699 TRPM2-201ENST00000300481 5627 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
NKX2-1P43699 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC11.85□□□□□ -0.51
NKX2-1P43699 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC11.85□□□□□ -0.51
NKX2-1P43699 LRRC59-203ENST00000576448 1531 ntBASIC11.85□□□□□ -0.51
NKX2-1P43699 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
NKX2-1P43699 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC11.85□□□□□ -0.51
NKX2-1P43699 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
NKX2-1P43699 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
NKX2-1P43699 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
NKX2-1P43699 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
NKX2-1P43699 NADK-202ENST00000341991 3098 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
NKX2-1P43699 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC11.85□□□□□ -0.51
NKX2-1P43699 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC11.85□□□□□ -0.51
NKX2-1P43699 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
NKX2-1P43699 POLG-202ENST00000442287 4487 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
NKX2-1P43699 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
NKX2-1P43699 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
NKX2-1P43699 DYSF-202ENST00000394120 6543 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
NKX2-1P43699 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
NKX2-1P43699 DTX2P1-UPK3BP1-PMS2P11-203ENST00000636308 4646 ntTSL 5 BASIC11.84□□□□□ -0.51
NKX2-1P43699 SLC1A1-201ENST00000262352 3722 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
NKX2-1P43699 CACNA1C-231ENST00000616390 2833 ntTSL 2 BASIC11.84□□□□□ -0.51
NKX2-1P43699 FLNA-203ENST00000369850 8382 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
NKX2-1P43699 COG5-201ENST00000297135 4060 ntAPPRIS P4 TSL 1 (best) BASIC11.84□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms