Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC16.97■□□□□ 0.31
HMGB1P09429 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB1P09429 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
HMGB1P09429 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC16.97■□□□□ 0.31
HMGB1P09429 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC16.97■□□□□ 0.31
HMGB1P09429 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB1P09429 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC16.97■□□□□ 0.31
HMGB1P09429 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB1P09429 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB1P09429 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB1P09429 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB1P09429 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB1P09429 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC16.97■□□□□ 0.31
HMGB1P09429 RPS3-201ENST00000278572 907 ntTSL 3 BASIC16.97■□□□□ 0.31
HMGB1P09429 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB1P09429 JTB-202ENST00000356648 1040 ntTSL 2 BASIC16.97■□□□□ 0.31
HMGB1P09429 HMGA1P1-201ENST00000415560 1062 ntBASIC16.97■□□□□ 0.31
HMGB1P09429 AC092580.1-201ENST00000433998 658 ntBASIC16.97■□□□□ 0.31
HMGB1P09429 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC16.97■□□□□ 0.31
HMGB1P09429 PTPA-218ENST00000435132 618 ntTSL 2 BASIC16.97■□□□□ 0.31
HMGB1P09429 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC16.97■□□□□ 0.31
HMGB1P09429 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC16.97■□□□□ 0.31
HMGB1P09429 DERL2-202ENST00000570848 657 ntTSL 5 BASIC16.97■□□□□ 0.31
HMGB1P09429 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC16.97■□□□□ 0.31
HMGB1P09429 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC16.97■□□□□ 0.31
HMGB1P09429 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC16.97■□□□□ 0.31
HMGB1P09429 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC16.97■□□□□ 0.31
HMGB1P09429 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
HMGB1P09429 AGAP10P-201ENST00000454844 2418 ntBASIC16.97■□□□□ 0.31
HMGB1P09429 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC16.97■□□□□ 0.31
HMGB1P09429 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB1P09429 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC16.97■□□□□ 0.31
HMGB1P09429 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB1P09429 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB1P09429 AL590824.1-201ENST00000403828 1349 ntBASIC16.96■□□□□ 0.31
HMGB1P09429 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGB1P09429 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGB1P09429 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGB1P09429 ARHGAP23P1-201ENST00000562773 1937 ntBASIC16.96■□□□□ 0.31
HMGB1P09429 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
HMGB1P09429 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGB1P09429 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC16.96■□□□□ 0.31
HMGB1P09429 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGB1P09429 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
HMGB1P09429 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC16.96■□□□□ 0.31
HMGB1P09429 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC16.96■□□□□ 0.31
HMGB1P09429 WBP2-203ENST00000433525 928 ntTSL 2 BASIC16.96■□□□□ 0.31
HMGB1P09429 AK2P2-201ENST00000439142 405 ntBASIC16.96■□□□□ 0.31
HMGB1P09429 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGB1P09429 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGB1P09429 AC106794.1-201ENST00000506935 792 ntBASIC16.96■□□□□ 0.31
HMGB1P09429 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC16.96■□□□□ 0.31
HMGB1P09429 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC16.96■□□□□ 0.31
HMGB1P09429 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC16.96■□□□□ 0.31
HMGB1P09429 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC16.96■□□□□ 0.31
HMGB1P09429 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC16.96■□□□□ 0.31
HMGB1P09429 AC090164.2-201ENST00000611487 516 ntBASIC16.96■□□□□ 0.31
HMGB1P09429 PRKN-211ENST00000615065 261 ntTSL 5 BASIC16.96■□□□□ 0.31
HMGB1P09429 AC092299.1-201ENST00000632679 757 ntBASIC16.96■□□□□ 0.31
HMGB1P09429 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
HMGB1P09429 AP002353.1-201ENST00000528257 1599 ntBASIC16.96■□□□□ 0.31
HMGB1P09429 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGB1P09429 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGB1P09429 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGB1P09429 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGB1P09429 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGB1P09429 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
HMGB1P09429 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
HMGB1P09429 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
HMGB1P09429 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC16.96■□□□□ 0.3
HMGB1P09429 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
HMGB1P09429 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
HMGB1P09429 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
HMGB1P09429 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.3
HMGB1P09429 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC16.96■□□□□ 0.3
HMGB1P09429 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB1P09429 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
HMGB1P09429 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC16.95■□□□□ 0.3
HMGB1P09429 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB1P09429 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC16.95■□□□□ 0.3
HMGB1P09429 AC111170.3-201ENST00000624282 2464 ntBASIC16.95■□□□□ 0.3
HMGB1P09429 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB1P09429 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC16.95■□□□□ 0.3
HMGB1P09429 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB1P09429 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB1P09429 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
HMGB1P09429 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB1P09429 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC16.95■□□□□ 0.3
HMGB1P09429 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB1P09429 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB1P09429 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC16.95■□□□□ 0.3
HMGB1P09429 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC16.95■□□□□ 0.3
HMGB1P09429 AC126915.1-201ENST00000522847 1038 ntBASIC16.95■□□□□ 0.3
HMGB1P09429 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC16.95■□□□□ 0.3
HMGB1P09429 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC16.95■□□□□ 0.3
HMGB1P09429 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB1P09429 SNORD3B-2-202ENST00000571722 791 ntBASIC16.95■□□□□ 0.3
HMGB1P09429 AL359881.2-201ENST00000602973 570 ntBASIC16.95■□□□□ 0.3
HMGB1P09429 AL132994.2-201ENST00000603120 687 ntBASIC16.95■□□□□ 0.3
HMGB1P09429 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms