Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
RNF40O75150 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
RNF40O75150 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
RNF40O75150 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC15.7■□□□□ 0.1
RNF40O75150 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNF40O75150 MPV17-205ENST00000402310 906 ntTSL 5 BASIC15.7■□□□□ 0.1
RNF40O75150 AC004945.1-201ENST00000416738 983 ntBASIC15.7■□□□□ 0.1
RNF40O75150 CALR4P-201ENST00000431943 946 ntBASIC15.7■□□□□ 0.1
RNF40O75150 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC15.7■□□□□ 0.1
RNF40O75150 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC15.7■□□□□ 0.1
RNF40O75150 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC15.7■□□□□ 0.1
RNF40O75150 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC15.7■□□□□ 0.1
RNF40O75150 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC15.7■□□□□ 0.1
RNF40O75150 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC15.7■□□□□ 0.1
RNF40O75150 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC15.7■□□□□ 0.1
RNF40O75150 ETV2-208ENST00000621247 941 ntTSL 5 BASIC15.7■□□□□ 0.1
RNF40O75150 PPA1-206ENST00000625364 644 ntTSL 5 BASIC15.7■□□□□ 0.1
RNF40O75150 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNF40O75150 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
RNF40O75150 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNF40O75150 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
RNF40O75150 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNF40O75150 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNF40O75150 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNF40O75150 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNF40O75150 AC023794.5-201ENST00000564380 2157 ntBASIC15.7■□□□□ 0.1
RNF40O75150 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC15.7■□□□□ 0.1
RNF40O75150 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
RNF40O75150 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNF40O75150 FAM90A12P-201ENST00000519497 2375 ntBASIC15.7■□□□□ 0.1
RNF40O75150 FAM90A24P-201ENST00000520792 2369 ntBASIC15.7■□□□□ 0.1
RNF40O75150 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
RNF40O75150 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
RNF40O75150 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
RNF40O75150 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNF40O75150 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC15.7■□□□□ 0.1
RNF40O75150 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNF40O75150 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
RNF40O75150 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
RNF40O75150 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNF40O75150 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNF40O75150 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNF40O75150 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC15.7■□□□□ 0.1
RNF40O75150 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RNF40O75150 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
RNF40O75150 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF40O75150 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF40O75150 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF40O75150 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
RNF40O75150 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF40O75150 REXO1L4P-201ENST00000605109 1937 ntBASIC15.69■□□□□ 0.1
RNF40O75150 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RNF40O75150 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF40O75150 RNU1-114P-201ENST00000365297 166 ntBASIC15.69■□□□□ 0.1
RNF40O75150 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
RNF40O75150 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF40O75150 SLC25A24P2-201ENST00000415059 510 ntBASIC15.69■□□□□ 0.1
RNF40O75150 KLF2P2-201ENST00000416807 1039 ntBASIC15.69■□□□□ 0.1
RNF40O75150 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC15.69■□□□□ 0.1
RNF40O75150 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC15.69■□□□□ 0.1
RNF40O75150 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC15.69■□□□□ 0.1
RNF40O75150 IGHJ2P-201ENST00000454480 60 ntBASIC15.69■□□□□ 0.1
RNF40O75150 AC007688.1-201ENST00000475592 759 ntBASIC15.69■□□□□ 0.1
RNF40O75150 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC15.69■□□□□ 0.1
RNF40O75150 PARP8-218ENST00000513738 596 ntTSL 4 BASIC15.69■□□□□ 0.1
RNF40O75150 AC022447.6-201ENST00000515522 438 ntBASIC15.69■□□□□ 0.1
RNF40O75150 ARL16-210ENST00000574938 751 ntTSL 2 BASIC15.69■□□□□ 0.1
RNF40O75150 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC15.69■□□□□ 0.1
RNF40O75150 EEF1DP1-201ENST00000585891 896 ntBASIC15.69■□□□□ 0.1
RNF40O75150 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC15.69■□□□□ 0.1
RNF40O75150 ECM1P1-201ENST00000604092 1279 ntBASIC15.69■□□□□ 0.1
RNF40O75150 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RNF40O75150 AC108359.1-201ENST00000616451 1211 ntBASIC15.69■□□□□ 0.1
RNF40O75150 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC15.69■□□□□ 0.1
RNF40O75150 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF40O75150 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF40O75150 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RNF40O75150 DRD2-201ENST00000346454 2433 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RNF40O75150 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RNF40O75150 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF40O75150 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC15.69■□□□□ 0.1
RNF40O75150 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RNF40O75150 AC007787.1-201ENST00000588095 1583 ntBASIC15.69■□□□□ 0.1
RNF40O75150 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
RNF40O75150 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
RNF40O75150 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF40O75150 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF40O75150 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF40O75150 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF40O75150 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF40O75150 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF40O75150 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF40O75150 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF40O75150 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RNF40O75150 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RNF40O75150 HARS-202ENST00000415192 1401 ntTSL 2 BASIC15.68■□□□□ 0.1
RNF40O75150 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
RNF40O75150 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC15.68■□□□□ 0.1
RNF40O75150 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC15.68■□□□□ 0.1
RNF40O75150 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms