Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC16.46■□□□□ 0.23
USP28Q96RU2 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
USP28Q96RU2 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC16.46■□□□□ 0.23
USP28Q96RU2 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
USP28Q96RU2 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
USP28Q96RU2 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
USP28Q96RU2 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
USP28Q96RU2 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
USP28Q96RU2 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
USP28Q96RU2 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
USP28Q96RU2 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
USP28Q96RU2 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
USP28Q96RU2 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
USP28Q96RU2 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
USP28Q96RU2 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC16.46■□□□□ 0.23
USP28Q96RU2 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
USP28Q96RU2 TISP43-201ENST00000409793 538 ntTSL 4 BASIC16.46■□□□□ 0.23
USP28Q96RU2 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC16.46■□□□□ 0.23
USP28Q96RU2 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC16.46■□□□□ 0.23
USP28Q96RU2 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
USP28Q96RU2 AC021016.3-201ENST00000608367 477 ntBASIC16.46■□□□□ 0.23
USP28Q96RU2 AC008687.7-202ENST00000637404 953 ntBASIC16.46■□□□□ 0.23
USP28Q96RU2 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
USP28Q96RU2 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
USP28Q96RU2 AMT-239ENST00000636865 1914 ntTSL 5 BASIC16.46■□□□□ 0.23
USP28Q96RU2 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
USP28Q96RU2 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC16.46■□□□□ 0.23
USP28Q96RU2 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
USP28Q96RU2 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
USP28Q96RU2 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
USP28Q96RU2 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC16.46■□□□□ 0.22
USP28Q96RU2 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
USP28Q96RU2 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.22
USP28Q96RU2 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC16.46■□□□□ 0.22
USP28Q96RU2 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC16.46■□□□□ 0.22
USP28Q96RU2 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
USP28Q96RU2 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.22
USP28Q96RU2 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC16.46■□□□□ 0.22
USP28Q96RU2 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC16.46■□□□□ 0.22
USP28Q96RU2 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
USP28Q96RU2 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
USP28Q96RU2 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
USP28Q96RU2 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC16.45■□□□□ 0.22
USP28Q96RU2 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC16.45■□□□□ 0.22
USP28Q96RU2 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
USP28Q96RU2 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
USP28Q96RU2 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
USP28Q96RU2 MARK2P9-201ENST00000430958 1727 ntBASIC16.45■□□□□ 0.22
USP28Q96RU2 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC16.45■□□□□ 0.22
USP28Q96RU2 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
USP28Q96RU2 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
USP28Q96RU2 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC16.45■□□□□ 0.22
USP28Q96RU2 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
USP28Q96RU2 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
USP28Q96RU2 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC16.45■□□□□ 0.22
USP28Q96RU2 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC16.45■□□□□ 0.22
USP28Q96RU2 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC16.45■□□□□ 0.22
USP28Q96RU2 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
USP28Q96RU2 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
USP28Q96RU2 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
USP28Q96RU2 ANKRD19P-201ENST00000338192 862 ntBASIC16.45■□□□□ 0.22
USP28Q96RU2 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC16.45■□□□□ 0.22
USP28Q96RU2 CTBP2P5-201ENST00000454986 1264 ntBASIC16.45■□□□□ 0.22
USP28Q96RU2 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC16.45■□□□□ 0.22
USP28Q96RU2 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC16.45■□□□□ 0.22
USP28Q96RU2 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
USP28Q96RU2 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC16.45■□□□□ 0.22
USP28Q96RU2 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC16.45■□□□□ 0.22
USP28Q96RU2 RNF41-210ENST00000552244 716 ntTSL 3 BASIC16.45■□□□□ 0.22
USP28Q96RU2 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
USP28Q96RU2 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC16.45■□□□□ 0.22
USP28Q96RU2 PAM16-211ENST00000575848 518 ntTSL 3 BASIC16.45■□□□□ 0.22
USP28Q96RU2 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
USP28Q96RU2 MIR3197-201ENST00000582241 73 ntBASIC16.45■□□□□ 0.22
USP28Q96RU2 AC105233.6-201ENST00000642093 218 ntBASIC16.45■□□□□ 0.22
USP28Q96RU2 CYP4F23P-201ENST00000593402 1579 ntBASIC16.45■□□□□ 0.22
USP28Q96RU2 CCT8L1P-201ENST00000465400 1674 ntBASIC16.45■□□□□ 0.22
USP28Q96RU2 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
USP28Q96RU2 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
USP28Q96RU2 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC16.45■□□□□ 0.22
USP28Q96RU2 USP39-220ENST00000613444 2161 ntTSL 2 BASIC16.45■□□□□ 0.22
USP28Q96RU2 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
USP28Q96RU2 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC16.45■□□□□ 0.22
USP28Q96RU2 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
USP28Q96RU2 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
USP28Q96RU2 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
USP28Q96RU2 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
USP28Q96RU2 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
USP28Q96RU2 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC16.45■□□□□ 0.22
USP28Q96RU2 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC16.45■□□□□ 0.22
USP28Q96RU2 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
USP28Q96RU2 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
USP28Q96RU2 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
USP28Q96RU2 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
USP28Q96RU2 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
USP28Q96RU2 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
USP28Q96RU2 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
USP28Q96RU2 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC16.44■□□□□ 0.22
USP28Q96RU2 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
USP28Q96RU2 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms