Protein–RNA interactions for Protein: Q96PV0

SYNGAP1, Ras/Rap GTPase-activating protein SynGAP, humanhuman

Predictions only

Length 1,343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1Q96PV0 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC16.31■□□□□ 0.2
SYNGAP1Q96PV0 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC16.31■□□□□ 0.2
SYNGAP1Q96PV0 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC16.31■□□□□ 0.2
SYNGAP1Q96PV0 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC16.31■□□□□ 0.2
SYNGAP1Q96PV0 AP000322.3-201ENST00000608665 388 ntBASIC16.31■□□□□ 0.2
SYNGAP1Q96PV0 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SYNGAP1Q96PV0 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC16.31■□□□□ 0.2
SYNGAP1Q96PV0 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SYNGAP1Q96PV0 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SYNGAP1Q96PV0 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SYNGAP1Q96PV0 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SYNGAP1Q96PV0 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SYNGAP1Q96PV0 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC16.31■□□□□ 0.2
SYNGAP1Q96PV0 MIR600HG-201ENST00000449175 5984 ntBASIC16.31■□□□□ 0.2
SYNGAP1Q96PV0 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
SYNGAP1Q96PV0 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
SYNGAP1Q96PV0 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SYNGAP1Q96PV0 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC16.31■□□□□ 0.2
SYNGAP1Q96PV0 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
SYNGAP1Q96PV0 SNX18-202ENST00000343017 3140 ntBASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 ERP29P1-201ENST00000442902 706 ntBASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 ALG1L13P-202ENST00000519320 584 ntBASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 RN7SL665P-201ENST00000578793 300 ntBASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 MIR2392-201ENST00000584881 84 ntBASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 DBP-202ENST00000593500 712 ntTSL 2 BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 AC005041.3-201ENST00000606287 649 ntBASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 AC005912.2-201ENST00000619492 2400 ntBASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SYNGAP1Q96PV0 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 BAK1P1-201ENST00000317045 636 ntBASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 OR8T1P-201ENST00000421347 918 ntBASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 AL157792.1-201ENST00000488281 530 ntBASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 CR383656.3-201ENST00000551315 183 ntBASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 ELP5-212ENST00000574255 671 ntTSL 2 BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 AC009145.4-201ENST00000625119 1294 ntBASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 LAP3P2-201ENST00000454686 1454 ntBASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SYNGAP1Q96PV0 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms