Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC15.52■□□□□ 0.08
LRCH3Q96II8 AL499606.1-201ENST00000627866 413 ntTSL 3 BASIC15.52■□□□□ 0.08
LRCH3Q96II8 CHD2-218ENST00000629346 1249 ntTSL 5 BASIC15.52■□□□□ 0.08
LRCH3Q96II8 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
LRCH3Q96II8 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LRCH3Q96II8 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LRCH3Q96II8 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LRCH3Q96II8 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
LRCH3Q96II8 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LRCH3Q96II8 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
LRCH3Q96II8 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LRCH3Q96II8 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC15.52■□□□□ 0.07
LRCH3Q96II8 AL050341.2-201ENST00000567508 1541 ntBASIC15.52■□□□□ 0.07
LRCH3Q96II8 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LRCH3Q96II8 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
LRCH3Q96II8 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC15.52■□□□□ 0.07
LRCH3Q96II8 AC003102.2-201ENST00000589195 1469 ntBASIC15.52■□□□□ 0.07
LRCH3Q96II8 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC15.52■□□□□ 0.07
LRCH3Q96II8 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
LRCH3Q96II8 RER1-203ENST00000378513 3000 ntTSL 3 BASIC15.52■□□□□ 0.07
LRCH3Q96II8 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRCH3Q96II8 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRCH3Q96II8 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRCH3Q96II8 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRCH3Q96II8 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LRCH3Q96II8 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRCH3Q96II8 SLC9A7P1-202ENST00000556476 2239 ntBASIC15.51■□□□□ 0.07
LRCH3Q96II8 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LRCH3Q96II8 AC099063.4-201ENST00000641099 1602 ntBASIC15.51■□□□□ 0.07
LRCH3Q96II8 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRCH3Q96II8 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 SAT1-201ENST00000379251 801 ntTSL 2 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 SAT1-202ENST00000379253 909 ntTSL 2 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 SAT1-203ENST00000379254 868 ntTSL 3 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRCH3Q96II8 THYN1-203ENST00000392594 943 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRCH3Q96II8 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 NRADDP-201ENST00000437305 691 ntBASIC15.51■□□□□ 0.07
LRCH3Q96II8 MDH2-205ENST00000461263 648 ntTSL 2 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 AC004893.2-203ENST00000482799 796 ntTSL 3 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 AC095040.1-201ENST00000513286 675 ntBASIC15.51■□□□□ 0.07
LRCH3Q96II8 MBP-230ENST00000528160 584 ntTSL 5 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRCH3Q96II8 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 COX5A-205ENST00000568517 582 ntTSL 3 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 AL365223.1-201ENST00000574864 1297 ntBASIC15.51■□□□□ 0.07
LRCH3Q96II8 AC012617.1-202ENST00000586488 509 ntTSL 2 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 BX088702.1-201ENST00000610784 235 ntBASIC15.51■□□□□ 0.07
LRCH3Q96II8 AC027281.2-201ENST00000623856 713 ntBASIC15.51■□□□□ 0.07
LRCH3Q96II8 NCS1-203ENST00000630865 1092 ntTSL 3 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRCH3Q96II8 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LRCH3Q96II8 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRCH3Q96II8 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LRCH3Q96II8 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRCH3Q96II8 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC15.51■□□□□ 0.07
LRCH3Q96II8 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRCH3Q96II8 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15.5■□□□□ 0.07
LRCH3Q96II8 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRCH3Q96II8 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
LRCH3Q96II8 C22orf42-201ENST00000382097 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRCH3Q96II8 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LRCH3Q96II8 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
LRCH3Q96II8 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRCH3Q96II8 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC15.5■□□□□ 0.07
LRCH3Q96II8 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LRCH3Q96II8 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRCH3Q96II8 AC012370.2-204ENST00000601940 1320 ntTSL 5 BASIC15.5■□□□□ 0.07
LRCH3Q96II8 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC15.5■□□□□ 0.07
LRCH3Q96II8 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LRCH3Q96II8 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC15.5■□□□□ 0.07
LRCH3Q96II8 CICP24-201ENST00000605464 2705 ntBASIC15.5■□□□□ 0.07
LRCH3Q96II8 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRCH3Q96II8 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.5■□□□□ 0.07
LRCH3Q96II8 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC15.5■□□□□ 0.07
LRCH3Q96II8 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRCH3Q96II8 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRCH3Q96II8 XAGE2-201ENST00000286049 618 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRCH3Q96II8 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
LRCH3Q96II8 HNRNPA1P27-201ENST00000412087 955 ntBASIC15.5■□□□□ 0.07
LRCH3Q96II8 HNRNPA1P25-201ENST00000422644 937 ntBASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms