Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 SLC16A6P1-201ENST00000413214 1059 ntBASIC14.63□□□□□ -0.07
SHROOM3Q8TF72 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC14.63□□□□□ -0.07
SHROOM3Q8TF72 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SHROOM3Q8TF72 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
SHROOM3Q8TF72 MIR3188-201ENST00000583494 85 ntBASIC14.63□□□□□ -0.07
SHROOM3Q8TF72 NKG7-204ENST00000595217 816 ntTSL 2 BASIC14.63□□□□□ -0.07
SHROOM3Q8TF72 HLA-C-210ENST00000640219 976 ntBASIC14.63□□□□□ -0.07
SHROOM3Q8TF72 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SHROOM3Q8TF72 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SHROOM3Q8TF72 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.63□□□□□ -0.07
SHROOM3Q8TF72 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
SHROOM3Q8TF72 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
SHROOM3Q8TF72 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SHROOM3Q8TF72 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
SHROOM3Q8TF72 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SHROOM3Q8TF72 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 TUBB4AP1-201ENST00000450755 1325 ntBASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 MPV17-204ENST00000399052 749 ntTSL 4 BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 MAPT-IT1-201ENST00000624111 3016 ntBASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 HNRNPA1P32-201ENST00000396326 963 ntBASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 TUBB8P8-201ENST00000458717 1058 ntBASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 ATP6V0CP2-201ENST00000469409 207 ntBASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 AC104784.1-201ENST00000473096 294 ntBASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 CFL1-214ENST00000534769 758 ntTSL 2 BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 FGFR3P5-201ENST00000564496 886 ntBASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC14.62□□□□□ -0.07
SHROOM3Q8TF72 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 AC104581.4-201ENST00000623126 3052 ntBASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 CYP46A4P-201ENST00000414953 267 ntBASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms