Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLK1P49759 RNF43-208ENST00000584437 5575 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLK1P49759 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
CLK1P49759 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLK1P49759 AC073548.1-201ENST00000624088 1882 ntBASIC13.68□□□□□ -0.22
CLK1P49759 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
CLK1P49759 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CLK1P49759 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC13.68□□□□□ -0.22
CLK1P49759 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLK1P49759 RSBN1L-201ENST00000334955 6422 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLK1P49759 COL2A1-201ENST00000337299 4257 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLK1P49759 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CLK1P49759 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLK1P49759 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLK1P49759 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLK1P49759 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CLK1P49759 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
CLK1P49759 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLK1P49759 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC13.68□□□□□ -0.22
CLK1P49759 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLK1P49759 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
CLK1P49759 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
CLK1P49759 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLK1P49759 PTPA-220ENST00000436883 532 ntTSL 4 BASIC13.68□□□□□ -0.22
CLK1P49759 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLK1P49759 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC13.68□□□□□ -0.22
CLK1P49759 COX20P2-201ENST00000452636 358 ntBASIC13.68□□□□□ -0.22
CLK1P49759 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC13.68□□□□□ -0.22
CLK1P49759 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC13.68□□□□□ -0.22
CLK1P49759 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CLK1P49759 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
CLK1P49759 RPS15-202ENST00000585665 467 ntTSL 3 BASIC13.68□□□□□ -0.22
CLK1P49759 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLK1P49759 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC13.68□□□□□ -0.22
CLK1P49759 AC010319.3-201ENST00000597028 470 ntBASIC13.68□□□□□ -0.22
CLK1P49759 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
CLK1P49759 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
CLK1P49759 EXOC3-201ENST00000315013 2682 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
CLK1P49759 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
CLK1P49759 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC13.68□□□□□ -0.22
CLK1P49759 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CLK1P49759 HLCS-201ENST00000336648 6010 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLK1P49759 NPC1-201ENST00000269228 5157 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLK1P49759 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLK1P49759 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLK1P49759 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC13.68□□□□□ -0.22
CLK1P49759 SPOCK2-201ENST00000317376 5328 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLK1P49759 USE1-206ENST00000595101 1776 ntTSL 2 BASIC13.68□□□□□ -0.22
CLK1P49759 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CLK1P49759 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLK1P49759 TP53INP2-202ENST00000374810 4184 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLK1P49759 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CLK1P49759 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CLK1P49759 PSD-202ENST00000406432 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLK1P49759 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC13.67□□□□□ -0.22
CLK1P49759 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLK1P49759 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC13.67□□□□□ -0.22
CLK1P49759 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CLK1P49759 MCC-201ENST00000302475 8257 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CLK1P49759 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLK1P49759 AL008727.1-201ENST00000564460 4728 ntTSL 2 BASIC13.67□□□□□ -0.22
CLK1P49759 NCOR2-204ENST00000405201 8533 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLK1P49759 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLK1P49759 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC13.67□□□□□ -0.22
CLK1P49759 MYO9B-204ENST00000594824 7595 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
CLK1P49759 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC13.67□□□□□ -0.22
CLK1P49759 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLK1P49759 FLT4-201ENST00000261937 5857 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLK1P49759 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLK1P49759 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLK1P49759 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLK1P49759 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
CLK1P49759 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC13.67□□□□□ -0.22
CLK1P49759 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLK1P49759 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC13.67□□□□□ -0.22
CLK1P49759 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CLK1P49759 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC13.67□□□□□ -0.22
CLK1P49759 TDH-203ENST00000531764 1110 ntBASIC13.67□□□□□ -0.22
CLK1P49759 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC13.67□□□□□ -0.22
CLK1P49759 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC13.67□□□□□ -0.22
CLK1P49759 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLK1P49759 ZBED6CL-201ENST00000343855 2933 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
CLK1P49759 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC13.67□□□□□ -0.22
CLK1P49759 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLK1P49759 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC13.67□□□□□ -0.22
CLK1P49759 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLK1P49759 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CLK1P49759 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLK1P49759 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CLK1P49759 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC13.67□□□□□ -0.22
CLK1P49759 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CLK1P49759 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLK1P49759 TMC8-201ENST00000318430 4411 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLK1P49759 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CLK1P49759 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CLK1P49759 PHLDB1-201ENST00000356063 5240 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
CLK1P49759 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC13.66□□□□□ -0.22
CLK1P49759 MLXIP-208ENST00000538698 5097 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CLK1P49759 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLK1P49759 AC134312.5-201ENST00000568031 1313 ntBASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 131.4 ms