Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
SOX2P48431 USE1-206ENST00000595101 1776 ntTSL 2 BASIC12.77□□□□□ -0.36
SOX2P48431 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC12.77□□□□□ -0.36
SOX2P48431 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC12.77□□□□□ -0.36
SOX2P48431 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC12.77□□□□□ -0.36
SOX2P48431 AC004241.5-201ENST00000623870 2448 ntBASIC12.77□□□□□ -0.37
SOX2P48431 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
SOX2P48431 CACNA1G-226ENST00000513689 6879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
SOX2P48431 CACNA1G-228ENST00000514079 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
SOX2P48431 CACNA1G-231ENST00000515165 6870 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
SOX2P48431 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
SOX2P48431 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SOX2P48431 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC12.77□□□□□ -0.37
SOX2P48431 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
SOX2P48431 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SOX2P48431 AC098850.1-201ENST00000419919 790 ntBASIC12.77□□□□□ -0.37
SOX2P48431 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
SOX2P48431 BASP1P1-201ENST00000430708 665 ntBASIC12.77□□□□□ -0.37
SOX2P48431 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
SOX2P48431 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC12.77□□□□□ -0.37
SOX2P48431 GALT-202ENST00000450095 1280 ntTSL 2 BASIC12.77□□□□□ -0.37
SOX2P48431 AC093214.1-201ENST00000511688 1107 ntBASIC12.77□□□□□ -0.37
SOX2P48431 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC12.77□□□□□ -0.37
SOX2P48431 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC12.77□□□□□ -0.37
SOX2P48431 AC138696.2-201ENST00000607376 223 ntBASIC12.77□□□□□ -0.37
SOX2P48431 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
SOX2P48431 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
SOX2P48431 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC12.77□□□□□ -0.37
SOX2P48431 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
SOX2P48431 CLUHP2-201ENST00000426660 1303 ntBASIC12.77□□□□□ -0.37
SOX2P48431 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
SOX2P48431 SUSD6-201ENST00000342745 5388 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SOX2P48431 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
SOX2P48431 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
SOX2P48431 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
SOX2P48431 SUGP2-203ENST00000452918 6176 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
SOX2P48431 LINC00384-201ENST00000437721 6852 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
SOX2P48431 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
SOX2P48431 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC12.77□□□□□ -0.37
SOX2P48431 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SOX2P48431 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC12.77□□□□□ -0.37
SOX2P48431 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
SOX2P48431 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SOX2P48431 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
SOX2P48431 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
SOX2P48431 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
SOX2P48431 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 GTF2IRD2-201ENST00000451013 3558 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
SOX2P48431 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC12.76□□□□□ -0.37
SOX2P48431 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 SUN2-201ENST00000405018 4022 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 MON1B-201ENST00000248248 6091 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 KCNS2-202ENST00000521839 4340 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
SOX2P48431 TMC8-201ENST00000318430 4411 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC12.76□□□□□ -0.37
SOX2P48431 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 NDUFA10-201ENST00000252711 4915 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 PGGT1BP2-201ENST00000398621 1028 ntBASIC12.76□□□□□ -0.37
SOX2P48431 LBH-203ENST00000404397 543 ntTSL 4 BASIC12.76□□□□□ -0.37
SOX2P48431 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC12.76□□□□□ -0.37
SOX2P48431 PON3-203ENST00000427422 894 ntTSL 3 BASIC12.76□□□□□ -0.37
SOX2P48431 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC12.76□□□□□ -0.37
SOX2P48431 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC12.76□□□□□ -0.37
SOX2P48431 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC12.76□□□□□ -0.37
SOX2P48431 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
SOX2P48431 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC12.76□□□□□ -0.37
SOX2P48431 KSR1-207ENST00000578981 748 ntTSL 4 BASIC12.76□□□□□ -0.37
SOX2P48431 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC12.76□□□□□ -0.37
SOX2P48431 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
SOX2P48431 AC099568.2-201ENST00000609194 695 ntBASIC12.76□□□□□ -0.37
SOX2P48431 AC106028.4-201ENST00000614509 607 ntBASIC12.76□□□□□ -0.37
SOX2P48431 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 HNRNPA1P48-201ENST00000562726 1377 ntBASIC12.76□□□□□ -0.37
SOX2P48431 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC12.76□□□□□ -0.37
SOX2P48431 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
SOX2P48431 AC114271.1-201ENST00000612689 2813 ntBASIC12.76□□□□□ -0.37
SOX2P48431 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 BMF-201ENST00000354670 4687 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC12.76□□□□□ -0.37
SOX2P48431 FAM193A-201ENST00000324666 4846 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC12.76□□□□□ -0.37
SOX2P48431 PRPSAP1-206ENST00000446526 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
SOX2P48431 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
SOX2P48431 HNRNPLL-209ENST00000449105 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms