Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 ZNF850-201ENST00000589390 523 ntTSL 3 BASIC18.25■□□□□ 0.51
COL18A1P39060 SMIM26-203ENST00000608034 670 ntAPPRIS ALT2 TSL 3 BASIC18.25■□□□□ 0.51
COL18A1P39060 EPM2A-218ENST00000639465 2203 ntTSL 5 BASIC18.25■□□□□ 0.51
COL18A1P39060 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL18A1P39060 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.25■□□□□ 0.51
COL18A1P39060 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL18A1P39060 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
COL18A1P39060 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL18A1P39060 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL18A1P39060 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL18A1P39060 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL18A1P39060 CELA3A-201ENST00000290122 887 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL18A1P39060 CD79B-203ENST00000392795 1254 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL18A1P39060 AC000077.1-201ENST00000420012 953 ntBASIC18.25■□□□□ 0.51
COL18A1P39060 HNRNPA1P25-201ENST00000422644 937 ntBASIC18.25■□□□□ 0.51
COL18A1P39060 KCNMA1-AS1-201ENST00000426234 863 ntTSL 5 BASIC18.25■□□□□ 0.51
COL18A1P39060 MAGEA7P-201ENST00000436482 942 ntBASIC18.25■□□□□ 0.51
COL18A1P39060 SMIM15-202ENST00000507416 584 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
COL18A1P39060 ZNF816-208ENST00000535506 529 ntTSL 4 BASIC18.25■□□□□ 0.51
COL18A1P39060 AC068675.1-201ENST00000588996 561 ntTSL 4 BASIC18.25■□□□□ 0.51
COL18A1P39060 RPS5-205ENST00000598495 800 ntTSL 3 BASIC18.25■□□□□ 0.51
COL18A1P39060 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL18A1P39060 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL18A1P39060 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL18A1P39060 TP63-206ENST00000392463 1386 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL18A1P39060 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL18A1P39060 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC18.24■□□□□ 0.51
COL18A1P39060 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL18A1P39060 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL18A1P39060 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC18.24■□□□□ 0.51
COL18A1P39060 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL18A1P39060 RSPH4A-202ENST00000368580 1410 ntTSL 5 BASIC18.24■□□□□ 0.51
COL18A1P39060 KRT8P38-201ENST00000441370 1430 ntBASIC18.24■□□□□ 0.51
COL18A1P39060 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL18A1P39060 CICP16-201ENST00000502609 2813 ntBASIC18.24■□□□□ 0.51
COL18A1P39060 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
COL18A1P39060 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC18.24■□□□□ 0.51
COL18A1P39060 CD44-203ENST00000278386 484 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL18A1P39060 FAU-201ENST00000279259 461 ntTSL 2 BASIC18.24■□□□□ 0.51
COL18A1P39060 NR1I3-201ENST00000367979 1074 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL18A1P39060 NR1I3-207ENST00000367985 1074 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL18A1P39060 MRPL55-219ENST00000391867 685 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
COL18A1P39060 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
COL18A1P39060 ATP5J-202ENST00000400087 826 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
COL18A1P39060 SUMO1-206ENST00000409368 1187 ntTSL 4 BASIC18.24■□□□□ 0.51
COL18A1P39060 NR1I3-225ENST00000508387 634 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL18A1P39060 AC142086.5-202ENST00000562500 217 ntBASIC18.24■□□□□ 0.51
COL18A1P39060 LINC02498-201ENST00000635390 1065 ntTSL 5 BASIC18.24■□□□□ 0.51
COL18A1P39060 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
COL18A1P39060 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL18A1P39060 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
COL18A1P39060 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
COL18A1P39060 TUBB2A-201ENST00000333628 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL18A1P39060 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC18.23■□□□□ 0.51
COL18A1P39060 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL18A1P39060 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
COL18A1P39060 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL18A1P39060 GOLGA8EP-201ENST00000530246 1959 ntBASIC18.23■□□□□ 0.51
COL18A1P39060 PTGR1-205ENST00000407693 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL18A1P39060 SEC13-209ENST00000397117 1603 ntTSL 5 BASIC18.23■□□□□ 0.51
COL18A1P39060 SESN3-201ENST00000278499 1710 ntTSL 2 BASIC18.23■□□□□ 0.51
COL18A1P39060 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL18A1P39060 REG3G-202ENST00000393897 856 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL18A1P39060 AHCYP3-201ENST00000420053 1279 ntBASIC18.23■□□□□ 0.51
COL18A1P39060 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC18.23■□□□□ 0.51
COL18A1P39060 ZNF235-203ENST00000589248 532 ntTSL 3 BASIC18.23■□□□□ 0.51
COL18A1P39060 C22orf42-201ENST00000382097 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL18A1P39060 TRAPPC4-214ENST00000533632 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL18A1P39060 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC18.23■□□□□ 0.51
COL18A1P39060 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL18A1P39060 TRO-225ENST00000622017 1403 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
COL18A1P39060 LINC01922-202ENST00000567168 1704 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL18A1P39060 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
COL18A1P39060 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL18A1P39060 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL18A1P39060 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL18A1P39060 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL18A1P39060 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL18A1P39060 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC18.22■□□□□ 0.51
COL18A1P39060 IL37-204ENST00000352179 709 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL18A1P39060 ARAF-202ENST00000377039 1271 ntTSL 2 BASIC18.22■□□□□ 0.51
COL18A1P39060 AL359092.2-201ENST00000423330 585 ntBASIC18.22■□□□□ 0.51
COL18A1P39060 AC019118.1-201ENST00000454530 435 ntTSL 3 BASIC18.22■□□□□ 0.51
COL18A1P39060 TPT1P6-201ENST00000458298 514 ntBASIC18.22■□□□□ 0.51
COL18A1P39060 AC099524.1-203ENST00000565272 756 ntTSL 5 BASIC18.22■□□□□ 0.51
COL18A1P39060 CYB5D2-202ENST00000573984 495 ntTSL 4 BASIC18.22■□□□□ 0.51
COL18A1P39060 CCDC32-215ENST00000625629 801 ntTSL 5 BASIC18.22■□□□□ 0.51
COL18A1P39060 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL18A1P39060 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
COL18A1P39060 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
COL18A1P39060 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL18A1P39060 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL18A1P39060 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
COL18A1P39060 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL18A1P39060 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
COL18A1P39060 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC18.22■□□□□ 0.51
COL18A1P39060 SPATA21-202ENST00000375577 1136 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL18A1P39060 IFNA2-201ENST00000380206 1135 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
COL18A1P39060 DNM1P46-202ENST00000415963 882 ntBASIC18.22■□□□□ 0.51
COL18A1P39060 PLA2G6-210ENST00000435484 612 ntTSL 4 BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms