Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL8A1P27658 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL8A1P27658 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL8A1P27658 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
COL8A1P27658 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL8A1P27658 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
COL8A1P27658 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL8A1P27658 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC12.6□□□□□ -0.39
COL8A1P27658 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL8A1P27658 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
COL8A1P27658 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL8A1P27658 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL8A1P27658 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC12.59□□□□□ -0.39
COL8A1P27658 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
COL8A1P27658 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
COL8A1P27658 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL8A1P27658 AL109809.1-201ENST00000418979 1367 ntBASIC12.59□□□□□ -0.39
COL8A1P27658 WASH7P-201ENST00000488147 1351 ntBASIC12.59□□□□□ -0.39
COL8A1P27658 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
COL8A1P27658 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
COL8A1P27658 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
COL8A1P27658 SALL4P5-201ENST00000419001 1760 ntBASIC12.59□□□□□ -0.39
COL8A1P27658 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL8A1P27658 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
COL8A1P27658 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC12.59□□□□□ -0.39
COL8A1P27658 AP005117.1-202ENST00000581724 1908 ntBASIC12.59□□□□□ -0.39
COL8A1P27658 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL8A1P27658 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC12.59□□□□□ -0.39
COL8A1P27658 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC12.59□□□□□ -0.39
COL8A1P27658 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL8A1P27658 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL8A1P27658 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL8A1P27658 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL8A1P27658 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
COL8A1P27658 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
COL8A1P27658 CCL25-202ENST00000315626 450 ntTSL 2 BASIC12.59□□□□□ -0.39
COL8A1P27658 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL8A1P27658 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC12.59□□□□□ -0.39
COL8A1P27658 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC12.59□□□□□ -0.39
COL8A1P27658 CELP-201ENST00000411440 1249 ntTSL 5 BASIC12.59□□□□□ -0.39
COL8A1P27658 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC12.59□□□□□ -0.39
COL8A1P27658 RPL3P5-201ENST00000441645 1232 ntBASIC12.59□□□□□ -0.39
COL8A1P27658 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC12.59□□□□□ -0.39
COL8A1P27658 RN7SL288P-201ENST00000490496 291 ntBASIC12.59□□□□□ -0.39
COL8A1P27658 CHCHD2P2-201ENST00000503744 321 ntBASIC12.59□□□□□ -0.39
COL8A1P27658 CD164-210ENST00000512821 964 ntTSL 2 BASIC12.59□□□□□ -0.39
COL8A1P27658 AC090136.2-201ENST00000517809 420 ntBASIC12.59□□□□□ -0.39
COL8A1P27658 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL8A1P27658 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC12.59□□□□□ -0.39
COL8A1P27658 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC12.59□□□□□ -0.39
COL8A1P27658 AC131206.1-201ENST00000538078 1211 ntBASIC12.59□□□□□ -0.39
COL8A1P27658 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
COL8A1P27658 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC12.59□□□□□ -0.39
COL8A1P27658 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC12.59□□□□□ -0.39
COL8A1P27658 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC12.59□□□□□ -0.39
COL8A1P27658 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC12.59□□□□□ -0.39
COL8A1P27658 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC12.59□□□□□ -0.39
COL8A1P27658 HELLS-212ENST00000630929 400 ntTSL 5 BASIC12.59□□□□□ -0.39
COL8A1P27658 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC12.59□□□□□ -0.39
COL8A1P27658 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC12.59□□□□□ -0.39
COL8A1P27658 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL8A1P27658 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC12.59□□□□□ -0.39
COL8A1P27658 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
COL8A1P27658 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC12.59□□□□□ -0.39
COL8A1P27658 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
COL8A1P27658 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
COL8A1P27658 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
COL8A1P27658 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL8A1P27658 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC12.59□□□□□ -0.39
COL8A1P27658 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
COL8A1P27658 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
COL8A1P27658 AHCYP4-201ENST00000419201 1315 ntBASIC12.59□□□□□ -0.39
COL8A1P27658 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC12.59□□□□□ -0.39
COL8A1P27658 TEKT4P2-202ENST00000559466 1312 ntBASIC12.59□□□□□ -0.39
COL8A1P27658 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
COL8A1P27658 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL8A1P27658 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC12.59□□□□□ -0.39
COL8A1P27658 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
COL8A1P27658 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC12.58□□□□□ -0.39
COL8A1P27658 REXO1L4P-201ENST00000605109 1937 ntBASIC12.58□□□□□ -0.39
COL8A1P27658 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
COL8A1P27658 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL8A1P27658 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC12.58□□□□□ -0.4
COL8A1P27658 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
COL8A1P27658 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL8A1P27658 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL8A1P27658 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC12.58□□□□□ -0.4
COL8A1P27658 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL8A1P27658 PYY2-201ENST00000315776 282 ntBASIC12.58□□□□□ -0.4
COL8A1P27658 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC12.58□□□□□ -0.4
COL8A1P27658 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL8A1P27658 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL8A1P27658 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
COL8A1P27658 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
COL8A1P27658 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC12.58□□□□□ -0.4
COL8A1P27658 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC12.58□□□□□ -0.4
COL8A1P27658 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL8A1P27658 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
COL8A1P27658 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC12.58□□□□□ -0.4
COL8A1P27658 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms