Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 NR1I3-225ENST00000508387 634 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL5A3P25940 AC011431.1-201ENST00000512971 230 ntBASIC17.43■□□□□ 0.38
COL5A3P25940 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL5A3P25940 AP003071.1-201ENST00000567925 622 ntTSL 3 BASIC17.43■□□□□ 0.38
COL5A3P25940 AL031710.1-201ENST00000570022 468 ntTSL 2 BASIC17.43■□□□□ 0.38
COL5A3P25940 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC17.43■□□□□ 0.38
COL5A3P25940 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC17.43■□□□□ 0.38
COL5A3P25940 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
COL5A3P25940 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL5A3P25940 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.43■□□□□ 0.38
COL5A3P25940 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.42■□□□□ 0.38
COL5A3P25940 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A3P25940 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A3P25940 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.42■□□□□ 0.38
COL5A3P25940 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
COL5A3P25940 TUBB2A-201ENST00000333628 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A3P25940 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A3P25940 OS9-207ENST00000439210 1946 ntTSL 2 BASIC17.42■□□□□ 0.38
COL5A3P25940 CHRNA1-205ENST00000409542 1460 ntTSL 3 BASIC17.42■□□□□ 0.38
COL5A3P25940 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A3P25940 PDHB-210ENST00000485460 1397 ntTSL 2 BASIC17.42■□□□□ 0.38
COL5A3P25940 TMEM74B-201ENST00000381894 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A3P25940 LINC01922-202ENST00000567168 1704 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A3P25940 ZNF485-202ENST00000374435 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A3P25940 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A3P25940 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A3P25940 LYPLA2-203ENST00000374503 868 ntTSL 2 BASIC17.42■□□□□ 0.38
COL5A3P25940 AC011284.1-201ENST00000427920 856 ntTSL 4 BASIC17.42■□□□□ 0.38
COL5A3P25940 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A3P25940 AC087071.1-201ENST00000469264 427 ntTSL 2 BASIC17.42■□□□□ 0.38
COL5A3P25940 ARHGEF26-AS1-203ENST00000480639 582 ntTSL 2 BASIC17.42■□□□□ 0.38
COL5A3P25940 AC008494.1-201ENST00000497612 796 ntBASIC17.42■□□□□ 0.38
COL5A3P25940 MARK2P17-201ENST00000498560 841 ntBASIC17.42■□□□□ 0.38
COL5A3P25940 ADSSL1-208ENST00000555674 520 ntTSL 3 BASIC17.42■□□□□ 0.38
COL5A3P25940 SMIM26-203ENST00000608034 670 ntAPPRIS ALT2 TSL 3 BASIC17.42■□□□□ 0.38
COL5A3P25940 AC012087.1-201ENST00000608068 809 ntTSL 5 BASIC17.42■□□□□ 0.38
COL5A3P25940 ZFAS1-208ENST00000618800 597 ntTSL 3 BASIC17.42■□□□□ 0.38
COL5A3P25940 AC020922.4-201ENST00000621389 339 ntBASIC17.42■□□□□ 0.38
COL5A3P25940 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC17.42■□□□□ 0.38
COL5A3P25940 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A3P25940 MMP19-202ENST00000409200 1431 ntTSL 2 BASIC17.42■□□□□ 0.38
COL5A3P25940 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A3P25940 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A3P25940 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A3P25940 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A3P25940 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC17.42■□□□□ 0.38
COL5A3P25940 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A3P25940 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
COL5A3P25940 HYMAI-201ENST00000635591 3347 ntBASIC17.42■□□□□ 0.38
COL5A3P25940 GOLGA8EP-201ENST00000530246 1959 ntBASIC17.42■□□□□ 0.38
COL5A3P25940 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC17.42■□□□□ 0.38
COL5A3P25940 EPM2A-218ENST00000639465 2203 ntTSL 5 BASIC17.42■□□□□ 0.38
COL5A3P25940 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
COL5A3P25940 C22orf42-201ENST00000382097 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A3P25940 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC17.42■□□□□ 0.38
COL5A3P25940 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC17.41■□□□□ 0.38
COL5A3P25940 XAGE2-201ENST00000286049 618 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL5A3P25940 AL359649.1-202ENST00000375713 443 ntTSL 5 BASIC17.41■□□□□ 0.38
COL5A3P25940 CCL19-202ENST00000378800 414 ntTSL 2 BASIC17.41■□□□□ 0.38
COL5A3P25940 MRPL55-219ENST00000391867 685 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
COL5A3P25940 LINC02026-202ENST00000414309 772 ntTSL 3 BASIC17.41■□□□□ 0.38
COL5A3P25940 DNM1P46-202ENST00000415963 882 ntBASIC17.41■□□□□ 0.38
COL5A3P25940 MAGEA7P-201ENST00000436482 942 ntBASIC17.41■□□□□ 0.38
COL5A3P25940 KRT19P4-201ENST00000443208 943 ntBASIC17.41■□□□□ 0.38
COL5A3P25940 LY6E-215ENST00000523847 427 ntTSL 3 BASIC17.41■□□□□ 0.38
COL5A3P25940 AC099524.1-203ENST00000565272 756 ntTSL 5 BASIC17.41■□□□□ 0.38
COL5A3P25940 NAA38-204ENST00000575208 529 ntTSL 3 BASIC17.41■□□□□ 0.38
COL5A3P25940 AC008622.3-201ENST00000621170 600 ntBASIC17.41■□□□□ 0.38
COL5A3P25940 SNORA50D-202ENST00000627561 132 ntBASIC17.41■□□□□ 0.38
COL5A3P25940 GOSR2-209ENST00000575949 1444 ntTSL 2 BASIC17.41■□□□□ 0.38
COL5A3P25940 AC007431.1-201ENST00000578662 1412 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL5A3P25940 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL5A3P25940 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL5A3P25940 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC17.41■□□□□ 0.38
COL5A3P25940 PRMT2-216ENST00000621201 1301 ntTSL 5 BASIC17.41■□□□□ 0.38
COL5A3P25940 SESN3-201ENST00000278499 1710 ntTSL 2 BASIC17.41■□□□□ 0.38
COL5A3P25940 HRH2-202ENST00000377291 2561 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL5A3P25940 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL5A3P25940 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL5A3P25940 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL5A3P25940 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL5A3P25940 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL5A3P25940 SUMO1-206ENST00000409368 1187 ntTSL 4 BASIC17.41■□□□□ 0.38
COL5A3P25940 KRT18P44-201ENST00000416086 1285 ntBASIC17.41■□□□□ 0.38
COL5A3P25940 HNF1A-AS1-201ENST00000433033 612 ntTSL 3 BASIC17.41■□□□□ 0.38
COL5A3P25940 AC006328.1-201ENST00000437571 379 ntBASIC17.41■□□□□ 0.38
COL5A3P25940 AC011676.3-201ENST00000520606 294 ntTSL 5 BASIC17.41■□□□□ 0.38
COL5A3P25940 ZNF816-208ENST00000535506 529 ntTSL 4 BASIC17.41■□□□□ 0.38
COL5A3P25940 LINC02369-202ENST00000540745 801 ntTSL 5 BASIC17.41■□□□□ 0.38
COL5A3P25940 BLOC1S5-205ENST00000543936 368 ntTSL 2 BASIC17.41■□□□□ 0.38
COL5A3P25940 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL5A3P25940 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL5A3P25940 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL5A3P25940 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL5A3P25940 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC17.4■□□□□ 0.38
COL5A3P25940 DAO-208ENST00000551281 1345 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL5A3P25940 KRT8P25-201ENST00000473150 1456 ntBASIC17.4■□□□□ 0.38
COL5A3P25940 AIRN-201ENST00000601203 4374 ntBASIC17.4■□□□□ 0.38
COL5A3P25940 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL5A3P25940 LINC00967-203ENST00000518035 1502 ntTSL 2 BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms