Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A1P12109 AC073210.1-201ENST00000414799 232 ntBASIC15.69■□□□□ 0.1
COL6A1P12109 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC15.69■□□□□ 0.1
COL6A1P12109 KRT8P30-201ENST00000432100 650 ntBASIC15.69■□□□□ 0.1
COL6A1P12109 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
COL6A1P12109 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC15.69■□□□□ 0.1
COL6A1P12109 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC15.69■□□□□ 0.1
COL6A1P12109 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC15.69■□□□□ 0.1
COL6A1P12109 AC005586.2-201ENST00000563946 837 ntBASIC15.69■□□□□ 0.1
COL6A1P12109 AC009163.5-202ENST00000571737 466 ntTSL 3 BASIC15.69■□□□□ 0.1
COL6A1P12109 TNFRSF12A-204ENST00000573001 648 ntTSL 3 BASIC15.69■□□□□ 0.1
COL6A1P12109 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC15.69■□□□□ 0.1
COL6A1P12109 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC15.69■□□□□ 0.1
COL6A1P12109 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A1P12109 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC15.69■□□□□ 0.1
COL6A1P12109 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC15.69■□□□□ 0.1
COL6A1P12109 AC090510.3-201ENST00000615831 821 ntBASIC15.69■□□□□ 0.1
COL6A1P12109 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC15.69■□□□□ 0.1
COL6A1P12109 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
COL6A1P12109 AC110057.1-201ENST00000636031 898 ntBASIC15.69■□□□□ 0.1
COL6A1P12109 AC139713.2-207ENST00000641556 1292 ntBASIC15.69■□□□□ 0.1
COL6A1P12109 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
COL6A1P12109 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A1P12109 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A1P12109 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A1P12109 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A1P12109 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A1P12109 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.69■□□□□ 0.1
COL6A1P12109 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A1P12109 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
COL6A1P12109 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A1P12109 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC15.69■□□□□ 0.1
COL6A1P12109 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A1P12109 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
COL6A1P12109 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A1P12109 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A1P12109 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A1P12109 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A1P12109 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A1P12109 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC15.68■□□□□ 0.1
COL6A1P12109 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A1P12109 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A1P12109 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC15.68■□□□□ 0.1
COL6A1P12109 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC15.68■□□□□ 0.1
COL6A1P12109 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A1P12109 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
COL6A1P12109 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A1P12109 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A1P12109 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
COL6A1P12109 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A1P12109 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A1P12109 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC15.68■□□□□ 0.1
COL6A1P12109 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A1P12109 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
COL6A1P12109 AC022080.1-201ENST00000366255 781 ntBASIC15.68■□□□□ 0.1
COL6A1P12109 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A1P12109 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC15.68■□□□□ 0.1
COL6A1P12109 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A1P12109 IFNWP2-201ENST00000431203 580 ntBASIC15.68■□□□□ 0.1
COL6A1P12109 GOLGA6L16P-201ENST00000441780 1299 ntBASIC15.68■□□□□ 0.1
COL6A1P12109 SOD2-205ENST00000444946 917 ntTSL 2 BASIC15.68■□□□□ 0.1
COL6A1P12109 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
COL6A1P12109 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
COL6A1P12109 AC025594.1-201ENST00000469533 543 ntBASIC15.68■□□□□ 0.1
COL6A1P12109 HOXC-AS3-203ENST00000514702 368 ntTSL 3 BASIC15.68■□□□□ 0.1
COL6A1P12109 MIR2278-201ENST00000516344 96 ntBASIC15.68■□□□□ 0.1
COL6A1P12109 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A1P12109 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC15.68■□□□□ 0.1
COL6A1P12109 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC15.68■□□□□ 0.1
COL6A1P12109 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
COL6A1P12109 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC15.68■□□□□ 0.1
COL6A1P12109 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
COL6A1P12109 AC008906.2-201ENST00000606656 474 ntTSL 2 BASIC15.68■□□□□ 0.1
COL6A1P12109 MCM8-AS1-201ENST00000613522 983 ntTSL 2 BASIC15.68■□□□□ 0.1
COL6A1P12109 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC15.68■□□□□ 0.1
COL6A1P12109 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A1P12109 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A1P12109 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A1P12109 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC15.68■□□□□ 0.1
COL6A1P12109 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A1P12109 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
COL6A1P12109 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A1P12109 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A1P12109 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC15.68■□□□□ 0.1
COL6A1P12109 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A1P12109 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC15.68■□□□□ 0.1
COL6A1P12109 PRMT2-216ENST00000621201 1301 ntTSL 5 BASIC15.68■□□□□ 0.1
COL6A1P12109 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC15.68■□□□□ 0.1
COL6A1P12109 AC018442.1-201ENST00000421439 2061 ntBASIC15.67■□□□□ 0.1
COL6A1P12109 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A1P12109 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A1P12109 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A1P12109 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC15.67■□□□□ 0.1
COL6A1P12109 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A1P12109 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A1P12109 CCT8L1P-201ENST00000465400 1674 ntBASIC15.67■□□□□ 0.1
COL6A1P12109 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A1P12109 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A1P12109 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A1P12109 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms