Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HLA-DOAP06340 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HLA-DOAP06340 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC16.88■□□□□ 0.29
HLA-DOAP06340 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HLA-DOAP06340 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HLA-DOAP06340 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HLA-DOAP06340 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC16.88■□□□□ 0.29
HLA-DOAP06340 BX679664.3-201ENST00000414070 555 ntBASIC16.88■□□□□ 0.29
HLA-DOAP06340 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC16.88■□□□□ 0.29
HLA-DOAP06340 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC16.88■□□□□ 0.29
HLA-DOAP06340 AL354861.1-201ENST00000445213 355 ntBASIC16.88■□□□□ 0.29
HLA-DOAP06340 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC16.88■□□□□ 0.29
HLA-DOAP06340 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC16.88■□□□□ 0.29
HLA-DOAP06340 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC16.88■□□□□ 0.29
HLA-DOAP06340 AC113935.1-201ENST00000471722 555 ntBASIC16.88■□□□□ 0.29
HLA-DOAP06340 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC16.88■□□□□ 0.29
HLA-DOAP06340 AP003398.1-201ENST00000531124 318 ntBASIC16.88■□□□□ 0.29
HLA-DOAP06340 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HLA-DOAP06340 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC16.88■□□□□ 0.29
HLA-DOAP06340 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
HLA-DOAP06340 RN7SL470P-201ENST00000583069 259 ntBASIC16.88■□□□□ 0.29
HLA-DOAP06340 MIR2392-201ENST00000584881 84 ntBASIC16.88■□□□□ 0.29
HLA-DOAP06340 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC16.88■□□□□ 0.29
HLA-DOAP06340 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC16.88■□□□□ 0.29
HLA-DOAP06340 AP001065.2-201ENST00000617205 644 ntBASIC16.88■□□□□ 0.29
HLA-DOAP06340 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC16.88■□□□□ 0.29
HLA-DOAP06340 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
HLA-DOAP06340 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
HLA-DOAP06340 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC16.88■□□□□ 0.29
HLA-DOAP06340 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HLA-DOAP06340 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
HLA-DOAP06340 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
HLA-DOAP06340 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC16.88■□□□□ 0.29
HLA-DOAP06340 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HLA-DOAP06340 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC16.88■□□□□ 0.29
HLA-DOAP06340 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
HLA-DOAP06340 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC16.88■□□□□ 0.29
HLA-DOAP06340 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
HLA-DOAP06340 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC16.88■□□□□ 0.29
HLA-DOAP06340 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
HLA-DOAP06340 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
HLA-DOAP06340 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
HLA-DOAP06340 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HLA-DOAP06340 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DOAP06340 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DOAP06340 HPD-204ENST00000543163 1709 ntTSL 5 BASIC16.87■□□□□ 0.29
HLA-DOAP06340 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DOAP06340 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DOAP06340 AC092053.3-201ENST00000641308 4975 ntBASIC16.87■□□□□ 0.29
HLA-DOAP06340 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC16.87■□□□□ 0.29
HLA-DOAP06340 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC16.87■□□□□ 0.29
HLA-DOAP06340 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DOAP06340 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DOAP06340 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
HLA-DOAP06340 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DOAP06340 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DOAP06340 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DOAP06340 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DOAP06340 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC16.87■□□□□ 0.29
HLA-DOAP06340 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DOAP06340 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DOAP06340 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC16.87■□□□□ 0.29
HLA-DOAP06340 PFN2-202ENST00000423691 911 ntTSL 2 BASIC16.87■□□□□ 0.29
HLA-DOAP06340 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC16.87■□□□□ 0.29
HLA-DOAP06340 AC018638.5-201ENST00000450885 754 ntBASIC16.87■□□□□ 0.29
HLA-DOAP06340 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC16.87■□□□□ 0.29
HLA-DOAP06340 AC018463.1-201ENST00000456674 917 ntBASIC16.87■□□□□ 0.29
HLA-DOAP06340 BUD31-205ENST00000456893 512 ntTSL 5 BASIC16.87■□□□□ 0.29
HLA-DOAP06340 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
HLA-DOAP06340 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC16.87■□□□□ 0.29
HLA-DOAP06340 OR5BD1P-201ENST00000532527 817 ntBASIC16.87■□□□□ 0.29
HLA-DOAP06340 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC16.87■□□□□ 0.29
HLA-DOAP06340 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC16.87■□□□□ 0.29
HLA-DOAP06340 AC073911.3-201ENST00000624401 631 ntBASIC16.87■□□□□ 0.29
HLA-DOAP06340 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC16.87■□□□□ 0.29
HLA-DOAP06340 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DOAP06340 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
HLA-DOAP06340 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DOAP06340 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC16.87■□□□□ 0.29
HLA-DOAP06340 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DOAP06340 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DOAP06340 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC16.87■□□□□ 0.29
HLA-DOAP06340 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC16.87■□□□□ 0.29
HLA-DOAP06340 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC16.86■□□□□ 0.29
HLA-DOAP06340 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DOAP06340 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DOAP06340 AC007952.5-201ENST00000572818 1486 ntBASIC16.86■□□□□ 0.29
HLA-DOAP06340 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC16.86■□□□□ 0.29
HLA-DOAP06340 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
HLA-DOAP06340 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC16.86■□□□□ 0.29
HLA-DOAP06340 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
HLA-DOAP06340 AC067931.2-201ENST00000623655 2003 ntBASIC16.86■□□□□ 0.29
HLA-DOAP06340 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DOAP06340 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
HLA-DOAP06340 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DOAP06340 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DOAP06340 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DOAP06340 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DOAP06340 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DOAP06340 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms