Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 CLUHP2-201ENST00000426660 1303 ntBASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 GULP1-207ENST00000409843 2643 ntAPPRIS ALT1 TSL 2 BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 AC040174.1-201ENST00000563003 2571 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 POM121L8P-201ENST00000417732 1281 ntBASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 RPL28-203ENST00000428193 573 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 RPL28-204ENST00000431533 590 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 POM121L9P-203ENST00000441984 1285 ntBASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 MESTP3-201ENST00000503460 968 ntBASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 RPL28-207ENST00000558815 616 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 AC132938.4-201ENST00000623835 848 ntBASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 AL138709.1-201ENST00000614840 1693 ntBASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 OS9-206ENST00000435406 2346 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 TJAP1-208ENST00000438588 2716 ntTSL 5 BASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 SLC4A8-205ENST00000535225 2262 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 TNN-202ENST00000621086 4234 ntTSL 5 BASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 AC005229.1-201ENST00000392885 409 ntBASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 AC106760.1-201ENST00000508690 800 ntBASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 MIR3197-201ENST00000582241 73 ntBASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 GFAP-201ENST00000253408 3135 ntTSL 5 BASIC16.79■□□□□ 0.28
CCDC39Q9UFE4 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC39Q9UFE4 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC39Q9UFE4 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC39Q9UFE4 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC39Q9UFE4 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC39Q9UFE4 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC39Q9UFE4 CTBP1-AS2-206ENST00000581398 5652 ntBASIC16.78■□□□□ 0.28
CCDC39Q9UFE4 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC39Q9UFE4 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
CCDC39Q9UFE4 MRPL37P1-201ENST00000592451 1337 ntBASIC16.78■□□□□ 0.28
CCDC39Q9UFE4 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC39Q9UFE4 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
CCDC39Q9UFE4 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC39Q9UFE4 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC39Q9UFE4 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC39Q9UFE4 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC39Q9UFE4 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC39Q9UFE4 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
CCDC39Q9UFE4 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC39Q9UFE4 TPM3P8-201ENST00000330554 643 ntBASIC16.78■□□□□ 0.28
CCDC39Q9UFE4 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC39Q9UFE4 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC39Q9UFE4 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
CCDC39Q9UFE4 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC39Q9UFE4 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms