Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 HINT2P1-201ENST00000419438 481 ntBASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 RPS9P1-201ENST00000419943 583 ntBASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 DUTP3-201ENST00000450025 415 ntBASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 TMEM198B-204ENST00000484016 896 ntBASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 AC007718.1-201ENST00000621078 280 ntBASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 AC051619.9-201ENST00000623237 597 ntBASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 MPI-203ENST00000535694 1523 ntTSL 2 BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC12.82□□□□□ -0.36
CLCF1Q9UBD9 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 RER1-203ENST00000378513 3000 ntTSL 3 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 GGCT-203ENST00000409144 836 ntTSL 2 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 AP000358.1-201ENST00000456260 156 ntBASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 KRT8P1-201ENST00000557533 1207 ntBASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 RN7SL190P-201ENST00000582519 257 ntBASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLCF1Q9UBD9 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms