Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 AGAP12P-201ENST00000585227 2359 ntBASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 USP17L6P-201ENST00000382470 1197 ntBASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 AC006453.4-201ENST00000636949 1252 ntBASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
ATG4AQ8WYN0 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 TMBIM7P-202ENST00000641474 1516 ntBASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 RGS5-214ENST00000429865 754 ntTSL 3 BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 GAS5-209ENST00000430245 723 ntTSL 3 BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 INE1-201ENST00000456273 945 ntBASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 KRT90P-201ENST00000549264 1064 ntBASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 AC233724.13-201ENST00000598383 410 ntBASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 MIER1-202ENST00000355977 3595 ntTSL 5 BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
ATG4AQ8WYN0 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
ATG4AQ8WYN0 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
ATG4AQ8WYN0 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
ATG4AQ8WYN0 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC14.97□□□□□ -0.01
ATG4AQ8WYN0 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC14.97□□□□□ -0.01
ATG4AQ8WYN0 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
ATG4AQ8WYN0 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
ATG4AQ8WYN0 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms