Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC12.76□□□□□ -0.37
CX3CR1P49238 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
CX3CR1P49238 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CX3CR1P49238 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
CX3CR1P49238 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
CX3CR1P49238 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC12.76□□□□□ -0.37
CX3CR1P49238 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC12.76□□□□□ -0.37
CX3CR1P49238 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CX3CR1P49238 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
CX3CR1P49238 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CX3CR1P49238 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC12.75□□□□□ -0.37
CX3CR1P49238 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CX3CR1P49238 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
CX3CR1P49238 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
CX3CR1P49238 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CX3CR1P49238 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CX3CR1P49238 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
CX3CR1P49238 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CX3CR1P49238 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
CX3CR1P49238 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
CX3CR1P49238 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
CX3CR1P49238 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
CX3CR1P49238 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CX3CR1P49238 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
CX3CR1P49238 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CX3CR1P49238 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CX3CR1P49238 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CX3CR1P49238 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CX3CR1P49238 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CX3CR1P49238 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
CX3CR1P49238 AL136309.1-201ENST00000403917 691 ntBASIC12.75□□□□□ -0.37
CX3CR1P49238 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC12.75□□□□□ -0.37
CX3CR1P49238 CNN2P8-201ENST00000421872 913 ntBASIC12.75□□□□□ -0.37
CX3CR1P49238 KRT43P-201ENST00000434019 910 ntBASIC12.75□□□□□ -0.37
CX3CR1P49238 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC12.75□□□□□ -0.37
CX3CR1P49238 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CX3CR1P49238 CICP12-201ENST00000455801 843 ntBASIC12.75□□□□□ -0.37
CX3CR1P49238 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CX3CR1P49238 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC12.75□□□□□ -0.37
CX3CR1P49238 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CX3CR1P49238 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC12.75□□□□□ -0.37
CX3CR1P49238 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC12.75□□□□□ -0.37
CX3CR1P49238 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CX3CR1P49238 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
CX3CR1P49238 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
CX3CR1P49238 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC12.75□□□□□ -0.37
CX3CR1P49238 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC12.75□□□□□ -0.37
CX3CR1P49238 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CX3CR1P49238 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC12.75□□□□□ -0.37
CX3CR1P49238 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC12.75□□□□□ -0.37
CX3CR1P49238 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC12.75□□□□□ -0.37
CX3CR1P49238 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CX3CR1P49238 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC12.75□□□□□ -0.37
CX3CR1P49238 SRP9-204ENST00000619790 377 ntTSL 2 BASIC12.75□□□□□ -0.37
CX3CR1P49238 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC12.75□□□□□ -0.37
CX3CR1P49238 IGHV3-72-202ENST00000621503 303 ntBASIC12.75□□□□□ -0.37
CX3CR1P49238 AC027601.3-201ENST00000622907 509 ntBASIC12.75□□□□□ -0.37
CX3CR1P49238 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC12.75□□□□□ -0.37
CX3CR1P49238 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CX3CR1P49238 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CX3CR1P49238 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CX3CR1P49238 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC12.75□□□□□ -0.37
CX3CR1P49238 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CX3CR1P49238 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC12.74□□□□□ -0.37
CX3CR1P49238 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CX3CR1P49238 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CX3CR1P49238 AC090643.2-201ENST00000623442 2029 ntBASIC12.74□□□□□ -0.37
CX3CR1P49238 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CX3CR1P49238 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CX3CR1P49238 DDC-213ENST00000617822 1809 ntTSL 3 BASIC12.74□□□□□ -0.37
CX3CR1P49238 APAF1-202ENST00000357310 7055 ntAPPRIS ALT1 TSL 5 BASIC12.74□□□□□ -0.37
CX3CR1P49238 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC12.74□□□□□ -0.37
CX3CR1P49238 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC12.74□□□□□ -0.37
CX3CR1P49238 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CX3CR1P49238 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC12.74□□□□□ -0.37
CX3CR1P49238 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC12.74□□□□□ -0.37
CX3CR1P49238 KRT8P4-201ENST00000509735 1454 ntBASIC12.74□□□□□ -0.37
CX3CR1P49238 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
CX3CR1P49238 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC12.74□□□□□ -0.37
CX3CR1P49238 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC12.74□□□□□ -0.37
CX3CR1P49238 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC12.74□□□□□ -0.37
CX3CR1P49238 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC12.74□□□□□ -0.37
CX3CR1P49238 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC12.74□□□□□ -0.37
CX3CR1P49238 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CX3CR1P49238 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CX3CR1P49238 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CX3CR1P49238 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
CX3CR1P49238 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CX3CR1P49238 GRAP-202ENST00000395635 834 ntTSL 2 BASIC12.74□□□□□ -0.37
CX3CR1P49238 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC12.74□□□□□ -0.37
CX3CR1P49238 MIR1202-201ENST00000408529 83 ntBASIC12.74□□□□□ -0.37
CX3CR1P49238 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC12.74□□□□□ -0.37
CX3CR1P49238 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC12.74□□□□□ -0.37
CX3CR1P49238 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC12.74□□□□□ -0.37
CX3CR1P49238 LHX6-205ENST00000464484 666 ntTSL 2 BASIC12.74□□□□□ -0.37
CX3CR1P49238 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC12.74□□□□□ -0.37
CX3CR1P49238 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC12.74□□□□□ -0.37
CX3CR1P49238 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC12.74□□□□□ -0.37
CX3CR1P49238 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC12.74□□□□□ -0.37
CX3CR1P49238 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC12.74□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms