Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC11.93□□□□□ -0.5
CDX1P47902 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
CDX1P47902 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC11.92□□□□□ -0.5
CDX1P47902 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CDX1P47902 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC11.92□□□□□ -0.5
CDX1P47902 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
CDX1P47902 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC11.92□□□□□ -0.5
CDX1P47902 NPNT-211ENST00000506666 2187 ntTSL 2 BASIC11.92□□□□□ -0.5
CDX1P47902 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CDX1P47902 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
CDX1P47902 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC11.92□□□□□ -0.5
CDX1P47902 C17orf53-203ENST00000585683 2529 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
CDX1P47902 CAMKV-215ENST00000488336 2905 ntTSL 2 BASIC11.92□□□□□ -0.5
CDX1P47902 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC11.92□□□□□ -0.5
CDX1P47902 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CDX1P47902 PLOD2-202ENST00000360060 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
CDX1P47902 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
CDX1P47902 ARAF-203ENST00000377045 2458 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
CDX1P47902 DAXX-213ENST00000620164 2462 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
CDX1P47902 STK33-217ENST00000534493 1895 ntTSL 2 BASIC11.92□□□□□ -0.5
CDX1P47902 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
CDX1P47902 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC11.92□□□□□ -0.5
CDX1P47902 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC11.92□□□□□ -0.5
CDX1P47902 MLPH-201ENST00000264605 3823 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
CDX1P47902 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CDX1P47902 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CDX1P47902 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
CDX1P47902 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CDX1P47902 MIR658-201ENST00000385210 100 ntBASIC11.92□□□□□ -0.5
CDX1P47902 AC092933.1-201ENST00000393644 945 ntBASIC11.92□□□□□ -0.5
CDX1P47902 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
CDX1P47902 MIR1909-201ENST00000411312 80 ntBASIC11.92□□□□□ -0.5
CDX1P47902 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC11.92□□□□□ -0.5
CDX1P47902 C2orf27AP3-201ENST00000434123 579 ntBASIC11.92□□□□□ -0.5
CDX1P47902 KLF2P4-201ENST00000451959 1225 ntBASIC11.92□□□□□ -0.5
CDX1P47902 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC11.92□□□□□ -0.5
CDX1P47902 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
CDX1P47902 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC11.92□□□□□ -0.5
CDX1P47902 AC133552.6-201ENST00000613406 534 ntBASIC11.92□□□□□ -0.5
CDX1P47902 AL354718.3-201ENST00000616414 581 ntBASIC11.92□□□□□ -0.5
CDX1P47902 CR382287.1-201ENST00000623954 586 ntBASIC11.92□□□□□ -0.5
CDX1P47902 SLC45A1-201ENST00000289877 2401 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CDX1P47902 AC012435.1-201ENST00000563287 3385 ntTSL 2 BASIC11.92□□□□□ -0.5
CDX1P47902 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC11.92□□□□□ -0.5
CDX1P47902 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
CDX1P47902 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
CDX1P47902 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
CDX1P47902 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CDX1P47902 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
CDX1P47902 CCBE1-201ENST00000398179 5979 ntTSL 5 BASIC11.92□□□□□ -0.5
CDX1P47902 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC11.92□□□□□ -0.5
CDX1P47902 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CDX1P47902 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CDX1P47902 GOLGA8VP-201ENST00000559009 1798 ntBASIC11.92□□□□□ -0.5
CDX1P47902 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CDX1P47902 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CDX1P47902 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
CDX1P47902 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
CDX1P47902 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC11.92□□□□□ -0.5
CDX1P47902 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC11.92□□□□□ -0.5
CDX1P47902 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC11.91□□□□□ -0.5
CDX1P47902 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
CDX1P47902 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
CDX1P47902 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
CDX1P47902 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC11.91□□□□□ -0.5
CDX1P47902 UNC5CL-201ENST00000244565 3136 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
CDX1P47902 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
CDX1P47902 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
CDX1P47902 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
CDX1P47902 AC093525.8-201ENST00000624099 1342 ntBASIC11.91□□□□□ -0.5
CDX1P47902 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
CDX1P47902 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
CDX1P47902 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
CDX1P47902 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
CDX1P47902 LHCGR-201ENST00000294954 3044 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
CDX1P47902 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC11.91□□□□□ -0.5
CDX1P47902 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
CDX1P47902 HYOU1-220ENST00000617285 4529 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
CDX1P47902 COL1A2-213ENST00000620463 4523 ntTSL 5 BASIC11.91□□□□□ -0.5
CDX1P47902 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
CDX1P47902 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
CDX1P47902 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
CDX1P47902 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
CDX1P47902 DLX1-201ENST00000341900 2130 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
CDX1P47902 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
CDX1P47902 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
CDX1P47902 GZMB-202ENST00000382540 816 ntTSL 5 BASIC11.91□□□□□ -0.5
CDX1P47902 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC11.91□□□□□ -0.5
CDX1P47902 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC11.91□□□□□ -0.5
CDX1P47902 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
CDX1P47902 CROCCP4-201ENST00000457096 498 ntBASIC11.91□□□□□ -0.5
CDX1P47902 AC007551.1-201ENST00000457394 519 ntBASIC11.91□□□□□ -0.5
CDX1P47902 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC11.91□□□□□ -0.5
CDX1P47902 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
CDX1P47902 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC11.91□□□□□ -0.5
CDX1P47902 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC11.91□□□□□ -0.5
CDX1P47902 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC11.91□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms