Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 HYMAI-201ENST00000635591 3347 ntBASIC18.28■□□□□ 0.52
COL18A1P39060 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
COL18A1P39060 RPAIN-202ENST00000381208 1394 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL18A1P39060 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL18A1P39060 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC18.28■□□□□ 0.52
COL18A1P39060 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL18A1P39060 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL18A1P39060 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL18A1P39060 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC18.28■□□□□ 0.52
COL18A1P39060 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC18.27■□□□□ 0.52
COL18A1P39060 LYPLA2-203ENST00000374503 868 ntTSL 2 BASIC18.27■□□□□ 0.52
COL18A1P39060 SNHG14-201ENST00000414175 610 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL18A1P39060 MKNK1-205ENST00000428112 1270 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.52
COL18A1P39060 LINC01502-203ENST00000447907 880 ntTSL 3 BASIC18.27■□□□□ 0.52
COL18A1P39060 AC005009.2-201ENST00000452471 687 ntTSL 3 BASIC18.27■□□□□ 0.52
COL18A1P39060 CRYBB2P1-204ENST00000509460 701 ntTSL 3 BASIC18.27■□□□□ 0.52
COL18A1P39060 AC090907.2-201ENST00000559857 720 ntTSL 3 BASIC18.27■□□□□ 0.52
COL18A1P39060 AC091588.3-201ENST00000583442 770 ntTSL 3 BASIC18.27■□□□□ 0.52
COL18A1P39060 AC003070.1-201ENST00000592389 457 ntTSL 2 BASIC18.27■□□□□ 0.52
COL18A1P39060 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL18A1P39060 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL18A1P39060 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
COL18A1P39060 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL18A1P39060 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL18A1P39060 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
COL18A1P39060 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL18A1P39060 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC18.27■□□□□ 0.52
COL18A1P39060 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL18A1P39060 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL18A1P39060 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL18A1P39060 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL18A1P39060 PDHB-210ENST00000485460 1397 ntTSL 2 BASIC18.27■□□□□ 0.52
COL18A1P39060 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL18A1P39060 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL18A1P39060 TKT-201ENST00000296289 1931 ntTSL 5 BASIC18.27■□□□□ 0.52
COL18A1P39060 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC18.27■□□□□ 0.52
COL18A1P39060 FGF21-202ENST00000593756 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL18A1P39060 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
COL18A1P39060 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC18.27■□□□□ 0.51
COL18A1P39060 MIR611-201ENST00000384869 67 ntBASIC18.27■□□□□ 0.51
COL18A1P39060 KRT18P44-201ENST00000416086 1285 ntBASIC18.27■□□□□ 0.51
COL18A1P39060 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC18.27■□□□□ 0.51
COL18A1P39060 RHOQP2-201ENST00000449922 579 ntBASIC18.27■□□□□ 0.51
COL18A1P39060 AC108724.1-201ENST00000481669 352 ntBASIC18.27■□□□□ 0.51
COL18A1P39060 MBP-230ENST00000528160 584 ntTSL 5 BASIC18.27■□□□□ 0.51
COL18A1P39060 PHBP18-201ENST00000546648 813 ntBASIC18.27■□□□□ 0.51
COL18A1P39060 RORA-AS1-202ENST00000558140 869 ntTSL 2 BASIC18.27■□□□□ 0.51
COL18A1P39060 HIST1H3E-201ENST00000614911 462 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
COL18A1P39060 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC18.27■□□□□ 0.51
COL18A1P39060 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
COL18A1P39060 MMP19-202ENST00000409200 1431 ntTSL 2 BASIC18.27■□□□□ 0.51
COL18A1P39060 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
COL18A1P39060 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL18A1P39060 PRKACB-205ENST00000370688 1905 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL18A1P39060 ARRB2-218ENST00000575877 1579 ntTSL 5 BASIC18.26■□□□□ 0.51
COL18A1P39060 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL18A1P39060 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL18A1P39060 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL18A1P39060 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL18A1P39060 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL18A1P39060 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
COL18A1P39060 AL031056.1-202ENST00000635954 2193 ntTSL 5 BASIC18.26■□□□□ 0.51
COL18A1P39060 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL18A1P39060 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC18.26■□□□□ 0.51
COL18A1P39060 GUCY2EP-203ENST00000531117 1918 ntBASIC18.26■□□□□ 0.51
COL18A1P39060 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL18A1P39060 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL18A1P39060 RPLP1-202ENST00000357790 445 ntTSL 2 BASIC18.26■□□□□ 0.51
COL18A1P39060 MYL4-202ENST00000393450 855 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL18A1P39060 RPL14-203ENST00000416518 812 ntTSL 3 BASIC18.26■□□□□ 0.51
COL18A1P39060 MARK2P17-201ENST00000498560 841 ntBASIC18.26■□□□□ 0.51
COL18A1P39060 LY6E-215ENST00000523847 427 ntTSL 3 BASIC18.26■□□□□ 0.51
COL18A1P39060 BLOC1S5-205ENST00000543936 368 ntTSL 2 BASIC18.26■□□□□ 0.51
COL18A1P39060 AC010202.1-201ENST00000551181 405 ntBASIC18.26■□□□□ 0.51
COL18A1P39060 AP003071.1-201ENST00000567925 622 ntTSL 3 BASIC18.26■□□□□ 0.51
COL18A1P39060 AC005736.3-201ENST00000571169 244 ntTSL 5 BASIC18.26■□□□□ 0.51
COL18A1P39060 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC18.26■□□□□ 0.51
COL18A1P39060 AC005609.5-201ENST00000624712 1053 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL18A1P39060 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL18A1P39060 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL18A1P39060 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC18.26■□□□□ 0.51
COL18A1P39060 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL18A1P39060 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC18.26■□□□□ 0.51
COL18A1P39060 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC18.26■□□□□ 0.51
COL18A1P39060 DAO-208ENST00000551281 1345 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL18A1P39060 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL18A1P39060 HRH2-202ENST00000377291 2561 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL18A1P39060 RBP4-203ENST00000371469 814 ntTSL 5 BASIC18.25■□□□□ 0.51
COL18A1P39060 LINC02026-202ENST00000414309 772 ntTSL 3 BASIC18.25■□□□□ 0.51
COL18A1P39060 PLA2G1B-202ENST00000423423 423 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL18A1P39060 AC011284.1-201ENST00000427920 856 ntTSL 4 BASIC18.25■□□□□ 0.51
COL18A1P39060 AC006328.1-201ENST00000437571 379 ntBASIC18.25■□□□□ 0.51
COL18A1P39060 YY1P2-201ENST00000438766 948 ntBASIC18.25■□□□□ 0.51
COL18A1P39060 KRT19P4-201ENST00000443208 943 ntBASIC18.25■□□□□ 0.51
COL18A1P39060 AL121894.1-201ENST00000450971 436 ntTSL 2 BASIC18.25■□□□□ 0.51
COL18A1P39060 AC015818.1-201ENST00000451011 244 ntBASIC18.25■□□□□ 0.51
COL18A1P39060 ADSSL1-208ENST00000555674 520 ntTSL 3 BASIC18.25■□□□□ 0.51
COL18A1P39060 AC104590.1-201ENST00000560813 648 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL18A1P39060 NAA38-204ENST00000575208 529 ntTSL 3 BASIC18.25■□□□□ 0.51
COL18A1P39060 AC004231.3-201ENST00000579136 258 ntTSL 3 BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms