Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
MSX2P35548 ALPP-201ENST00000392027 2971 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
MSX2P35548 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
MSX2P35548 WRB-204ENST00000398753 699 ntTSL 3 BASIC13.83□□□□□ -0.2
MSX2P35548 COA5-202ENST00000409997 557 ntTSL 4 BASIC13.83□□□□□ -0.2
MSX2P35548 KLF2P2-201ENST00000416807 1039 ntBASIC13.83□□□□□ -0.2
MSX2P35548 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC13.83□□□□□ -0.2
MSX2P35548 RN7SL399P-201ENST00000471648 279 ntBASIC13.83□□□□□ -0.2
MSX2P35548 AC125807.1-201ENST00000483097 614 ntBASIC13.83□□□□□ -0.2
MSX2P35548 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC13.83□□□□□ -0.2
MSX2P35548 LY6E-204ENST00000519546 971 ntTSL 2 BASIC13.83□□□□□ -0.2
MSX2P35548 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC13.83□□□□□ -0.2
MSX2P35548 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC13.83□□□□□ -0.2
MSX2P35548 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC13.83□□□□□ -0.2
MSX2P35548 RPS15-205ENST00000586686 562 ntTSL 5 BASIC13.83□□□□□ -0.2
MSX2P35548 RPS15-208ENST00000591804 711 ntTSL 5 BASIC13.83□□□□□ -0.2
MSX2P35548 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
MSX2P35548 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC13.83□□□□□ -0.2
MSX2P35548 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
MSX2P35548 RIC8B-201ENST00000355478 3207 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
MSX2P35548 TNFRSF8-201ENST00000263932 3686 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
MSX2P35548 MEST-206ENST00000416162 2158 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
MSX2P35548 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
MSX2P35548 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
MSX2P35548 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC13.83□□□□□ -0.2
MSX2P35548 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
MSX2P35548 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC13.83□□□□□ -0.2
MSX2P35548 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
MSX2P35548 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
MSX2P35548 MAP7D2-202ENST00000379651 3930 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
MSX2P35548 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
MSX2P35548 PAX8-203ENST00000348715 3966 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC13.82□□□□□ -0.2
MSX2P35548 PLAT-203ENST00000429089 2599 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
MSX2P35548 WHRN-201ENST00000265134 2847 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 MARK2-205ENST00000408948 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 GOLGA7B-203ENST00000596005 6378 ntTSL 2 BASIC13.82□□□□□ -0.2
MSX2P35548 AC100757.3-201ENST00000622361 1406 ntBASIC13.82□□□□□ -0.2
MSX2P35548 C19orf44-203ENST00000594035 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 MYRIP-204ENST00000444716 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 RASA4CP-203ENST00000446874 3193 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
MSX2P35548 MARK2P9-201ENST00000430958 1727 ntBASIC13.82□□□□□ -0.2
MSX2P35548 MUC20-203ENST00000436408 2463 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
MSX2P35548 FAM200A-202ENST00000449309 2480 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 TTK-201ENST00000230510 3477 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
MSX2P35548 FAM224B-201ENST00000458667 2032 ntTSL 2 BASIC13.82□□□□□ -0.2
MSX2P35548 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 KCNS2-202ENST00000521839 4340 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
MSX2P35548 PIK3R5-220ENST00000623421 4318 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
MSX2P35548 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 SERF2-209ENST00000409646 559 ntTSL 4 BASIC13.82□□□□□ -0.2
MSX2P35548 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC13.82□□□□□ -0.2
MSX2P35548 GIMAP3P-201ENST00000495150 836 ntBASIC13.82□□□□□ -0.2
MSX2P35548 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC13.82□□□□□ -0.2
MSX2P35548 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC13.82□□□□□ -0.2
MSX2P35548 AC009407.1-201ENST00000568958 598 ntBASIC13.82□□□□□ -0.2
MSX2P35548 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC13.82□□□□□ -0.2
MSX2P35548 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC13.82□□□□□ -0.2
MSX2P35548 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC13.82□□□□□ -0.2
MSX2P35548 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC13.82□□□□□ -0.2
MSX2P35548 AL671883.3-201ENST00000603274 991 ntBASIC13.82□□□□□ -0.2
MSX2P35548 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC13.82□□□□□ -0.2
MSX2P35548 AL590560.3-201ENST00000623350 461 ntBASIC13.82□□□□□ -0.2
MSX2P35548 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 TSPAN31-201ENST00000257910 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
MSX2P35548 ALDH3A2-201ENST00000176643 3928 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 TRPM4-202ENST00000427978 3444 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 ABI2-201ENST00000261016 6634 ntTSL 2 BASIC13.82□□□□□ -0.2
MSX2P35548 ABI2-203ENST00000261018 6638 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 COL2A1-201ENST00000337299 4257 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 ACIN1-202ENST00000338631 2445 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 AHI1-201ENST00000265602 4335 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 MKL1-203ENST00000402042 4343 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 ENOX1-201ENST00000261488 2982 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 AC144450.1-201ENST00000366424 1641 ntTSL 2 BASIC13.82□□□□□ -0.2
MSX2P35548 NME1-209ENST00000511355 1645 ntTSL 5 BASIC13.82□□□□□ -0.2
MSX2P35548 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 FLT4-212ENST00000619105 3806 ntTSL 5 BASIC13.82□□□□□ -0.2
MSX2P35548 FCHSD1-209ENST00000522783 2477 ntTSL 5 BASIC13.82□□□□□ -0.2
MSX2P35548 INSC-207ENST00000528567 2237 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
MSX2P35548 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC13.82□□□□□ -0.2
MSX2P35548 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 STAT4-202ENST00000392320 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX2P35548 SRPRB-201ENST00000466490 2827 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
MSX2P35548 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX2P35548 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
MSX2P35548 PEX1-201ENST00000248633 4385 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms