Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 AL590640.2-201ENST00000457038 527 ntBASIC11.08□□□□□ -0.64
HLA-DMBP28068 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 TMEM198B-204ENST00000484016 896 ntBASIC11.08□□□□□ -0.64
HLA-DMBP28068 AC068587.3-201ENST00000526613 355 ntBASIC11.08□□□□□ -0.64
HLA-DMBP28068 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 PTP4A1P2-201ENST00000546033 454 ntBASIC11.08□□□□□ -0.64
HLA-DMBP28068 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 MIR5189-201ENST00000577370 114 ntBASIC11.08□□□□□ -0.64
HLA-DMBP28068 BTNL10-201ENST00000595971 695 ntBASIC11.08□□□□□ -0.64
HLA-DMBP28068 MIR6752-201ENST00000618442 71 ntBASIC11.08□□□□□ -0.64
HLA-DMBP28068 PFAS-212ENST00000625942 396 ntTSL 5 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DMBP28068 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DMBP28068 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DMBP28068 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DMBP28068 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DMBP28068 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DMBP28068 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DMBP28068 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DMBP28068 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DMBP28068 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DMBP28068 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DMBP28068 CICP8-201ENST00000455800 2813 ntBASIC11.08□□□□□ -0.64
HLA-DMBP28068 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DMBP28068 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DMBP28068 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 TP73-211ENST00000604074 4806 ntTSL 5 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 AL590440.2-201ENST00000641973 1595 ntBASIC11.07□□□□□ -0.64
HLA-DMBP28068 PEG13-201ENST00000631594 5667 ntBASIC11.07□□□□□ -0.64
HLA-DMBP28068 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 AC004899.2-201ENST00000622993 3860 ntBASIC11.07□□□□□ -0.64
HLA-DMBP28068 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 AC079776.1-201ENST00000401540 1152 ntBASIC11.07□□□□□ -0.64
HLA-DMBP28068 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 RN7SKP175-201ENST00000408472 289 ntBASIC11.07□□□□□ -0.64
HLA-DMBP28068 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 ACTG1P3-201ENST00000431775 1114 ntBASIC11.07□□□□□ -0.64
HLA-DMBP28068 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 SLC25A47P1-201ENST00000531577 414 ntBASIC11.07□□□□□ -0.64
HLA-DMBP28068 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 ORC6-206ENST00000568364 888 ntTSL 5 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC11.07□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms