Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 SNX21-203ENST00000372541 771 ntTSL 2 BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 MIR658-201ENST00000385210 100 ntBASIC11.73□□□□□ -0.53
FOXA2Q9Y261 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 MPV17-206ENST00000402722 827 ntTSL 3 BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 AL161932.2-201ENST00000435436 679 ntBASIC11.73□□□□□ -0.53
FOXA2Q9Y261 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 AC022210.1-201ENST00000449856 793 ntBASIC11.73□□□□□ -0.53
FOXA2Q9Y261 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 CDC23-208ENST00000505120 455 ntTSL 3 BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 AC106820.3-201ENST00000561653 397 ntBASIC11.73□□□□□ -0.53
FOXA2Q9Y261 AC005586.2-201ENST00000563946 837 ntBASIC11.73□□□□□ -0.53
FOXA2Q9Y261 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 KLK3-207ENST00000595952 969 ntTSL 3 BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 AC105206.1-202ENST00000314927 2368 ntBASIC11.72□□□□□ -0.53
FOXA2Q9Y261 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 AL157996.1-201ENST00000624684 2299 ntBASIC11.72□□□□□ -0.53
FOXA2Q9Y261 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 USP17L6P-201ENST00000382470 1197 ntBASIC11.72□□□□□ -0.53
FOXA2Q9Y261 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 STX1A-203ENST00000395155 783 ntTSL 2 BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 PTPA-215ENST00000432124 567 ntTSL 4 BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 KRT223P-202ENST00000449164 1292 ntBASIC11.72□□□□□ -0.53
FOXA2Q9Y261 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 COX5BP1-201ENST00000507622 393 ntBASIC11.72□□□□□ -0.53
FOXA2Q9Y261 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 AC104506.1-201ENST00000609247 429 ntBASIC11.72□□□□□ -0.53
FOXA2Q9Y261 WNT11-204ENST00000621122 789 ntTSL 5 BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 AC008687.7-202ENST00000637404 953 ntBASIC11.72□□□□□ -0.53
FOXA2Q9Y261 COX11-210ENST00000639671 696 ntBASIC11.72□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms