Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 RUFY4-201ENST00000344321 2352 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 POLE2-203ENST00000553805 496 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 RN7SL48P-201ENST00000579283 293 ntBASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 AL358472.5-202ENST00000641448 1267 ntBASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 TMEM25-204ENST00000359862 2395 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 MEST-206ENST00000416162 2158 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 PNMA5-205ENST00000535214 3198 ntAPPRIS P2 TSL 3 BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC39Q9UFE4 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 GUSBP11-206ENST00000455485 3816 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 ENG-204ENST00000480266 2804 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 AAR2-202ENST00000373932 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 AL138725.1-201ENST00000407347 1314 ntBASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 PNKD-204ENST00000436005 978 ntTSL 5 BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 PTPA-220ENST00000436883 532 ntTSL 4 BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 RN7SL692P-201ENST00000464677 288 ntBASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 AP001889.1-201ENST00000525414 633 ntBASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 AC015936.2-201ENST00000593177 259 ntBASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 AC068075.1-201ENST00000519714 1832 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 BRSK2-207ENST00000528710 3528 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 MAP7-201ENST00000354570 4152 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CCDC39Q9UFE4 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 AL731571.1-201ENST00000617058 5428 ntBASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 MIR497HG-202ENST00000572453 3838 ntBASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 AL136172.1-201ENST00000598590 1394 ntBASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
CCDC39Q9UFE4 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms