Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SHANK3Q9BYB0 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SHANK3Q9BYB0 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC17.96■□□□□ 0.46
SHANK3Q9BYB0 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.46
SHANK3Q9BYB0 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
SHANK3Q9BYB0 TUBA1B-202ENST00000336023 1627 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 HAX1-201ENST00000328703 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 AC005077.3-201ENST00000449614 213 ntBASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 ALG1L15P-201ENST00000482834 794 ntBASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 AC092910.2-201ENST00000491262 348 ntBASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 AC233724.9-201ENST00000511694 407 ntBASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 AC090617.4-201ENST00000572404 422 ntTSL 3 BASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 SIGLEC20P-201ENST00000595243 1311 ntBASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 SLC7A8-214ENST00000621729 1371 ntTSL 5 BASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 AC097359.2-201ENST00000604992 2389 ntBASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 AQP7-202ENST00000377425 1068 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 PPIL3-205ENST00000409449 756 ntTSL 5 BASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 KCNMA1-AS1-201ENST00000426234 863 ntTSL 5 BASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 CBR3-AS1-202ENST00000427491 741 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 AP003351.1-201ENST00000522743 668 ntTSL 3 BASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 AL136295.3-201ENST00000558325 850 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 RN7SL602P-201ENST00000578326 324 ntBASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 RN7SL718P-201ENST00000581254 303 ntBASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 AC012593.1-214ENST00000586952 767 ntTSL 5 BASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 CBR3-AS1-207ENST00000608641 777 ntTSL 5 BASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHANK3Q9BYB0 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 TAGLN3-205ENST00000478951 1301 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 AIG1-203ENST00000367596 559 ntTSL 2 BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 AL137244.1-201ENST00000422931 865 ntBASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 RPSAP69-201ENST00000445739 546 ntTSL 4 BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 SNRPD2P2-201ENST00000473818 333 ntBASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 AC147876.1-201ENST00000504408 322 ntBASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 AC103736.1-201ENST00000524410 605 ntTSL 3 BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 AP000640.1-201ENST00000525337 879 ntTSL 2 BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 CADM1-221ENST00000612235 1042 ntTSL 5 BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 AC020922.4-201ENST00000621389 339 ntBASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 CRABP2-204ENST00000621784 1033 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 TTN-AS1-264ENST00000627564 1319 ntTSL 5 BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 CASP8-212ENST00000432109 1629 ntAPPRIS P4 TSL 5 BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 AL137077.2-201ENST00000635124 1608 ntBASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 NAAA-203ENST00000505594 1425 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
SHANK3Q9BYB0 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHANK3Q9BYB0 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SHANK3Q9BYB0 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHANK3Q9BYB0 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
SHANK3Q9BYB0 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC17.93■□□□□ 0.46
SHANK3Q9BYB0 CLUAP1-201ENST00000341633 1643 ntTSL 5 BASIC17.93■□□□□ 0.46
SHANK3Q9BYB0 XAGE2-201ENST00000286049 618 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHANK3Q9BYB0 BCL2L11-203ENST00000357757 947 ntTSL 5 BASIC17.93■□□□□ 0.46
SHANK3Q9BYB0 KRTAP12-2-201ENST00000360770 739 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
SHANK3Q9BYB0 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SHANK3Q9BYB0 TTTY18-201ENST00000438677 221 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SHANK3Q9BYB0 AC007279.1-201ENST00000448547 837 ntBASIC17.93■□□□□ 0.46
SHANK3Q9BYB0 DPY19L2P4-201ENST00000479881 442 ntBASIC17.93■□□□□ 0.46
SHANK3Q9BYB0 TIMM10-202ENST00000525158 530 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
SHANK3Q9BYB0 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC17.93■□□□□ 0.46
SHANK3Q9BYB0 CSTP2-201ENST00000610599 398 ntBASIC17.93■□□□□ 0.46
SHANK3Q9BYB0 AC009041.4-201ENST00000620075 638 ntBASIC17.93■□□□□ 0.46
SHANK3Q9BYB0 LINC01588-216ENST00000623502 975 ntTSL 2 BASIC17.93■□□□□ 0.46
SHANK3Q9BYB0 ADH1B-207ENST00000639454 1210 ntTSL 5 BASIC17.93■□□□□ 0.46
SHANK3Q9BYB0 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC17.93■□□□□ 0.46
SHANK3Q9BYB0 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC17.93■□□□□ 0.46
SHANK3Q9BYB0 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms