Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.69
SYNE1Q8NF91 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC4.53□□□□□ -1.69
SYNE1Q8NF91 ANKRD20A8P-201ENST00000432432 3512 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 RNU1-114P-201ENST00000365297 166 ntBASIC4.52□□□□□ -1.69
SYNE1Q8NF91 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 RN7SKP175-201ENST00000408472 289 ntBASIC4.52□□□□□ -1.69
SYNE1Q8NF91 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 AC087045.2-201ENST00000606279 1003 ntBASIC4.52□□□□□ -1.69
SYNE1Q8NF91 AC022748.3-201ENST00000621828 275 ntBASIC4.52□□□□□ -1.69
SYNE1Q8NF91 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 SLC24A4-204ENST00000531433 4531 ntAPPRIS ALT2 TSL 2 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 AL139094.1-201ENST00000405549 1188 ntBASIC4.52□□□□□ -1.69
SYNE1Q8NF91 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 RN7SL736P-201ENST00000613111 269 ntBASIC4.52□□□□□ -1.69
SYNE1Q8NF91 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 WDR47-201ENST00000357672 4144 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 SRC-201ENST00000358208 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 PCDHGA5-201ENST00000518069 4602 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 HLA-K-203ENST00000430151 1046 ntBASIC4.52□□□□□ -1.69
SYNE1Q8NF91 SUPT4H1P2-201ENST00000501248 353 ntBASIC4.52□□□□□ -1.69
SYNE1Q8NF91 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 AC005324.6-201ENST00000587972 613 ntBASIC4.52□□□□□ -1.69
SYNE1Q8NF91 AC138894.2-201ENST00000602838 371 ntBASIC4.52□□□□□ -1.69
SYNE1Q8NF91 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 RAVER1-201ENST00000293677 3595 ntAPPRIS P2 TSL 5 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 DDR1-227ENST00000376570 3820 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 B9D1-203ENST00000395615 805 ntTSL 3 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 AC011742.3-201ENST00000439053 820 ntBASIC4.52□□□□□ -1.69
SYNE1Q8NF91 FTLP1-201ENST00000449155 526 ntBASIC4.52□□□□□ -1.69
SYNE1Q8NF91 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 AC007292.2-201ENST00000593524 1812 ntBASIC4.52□□□□□ -1.69
SYNE1Q8NF91 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 AC132938.4-201ENST00000623835 848 ntBASIC4.52□□□□□ -1.69
SYNE1Q8NF91 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 OR2I1P-208ENST00000641137 4948 ntBASIC4.52□□□□□ -1.69
SYNE1Q8NF91 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 UBXN4-201ENST00000272638 4006 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 SRPK3-208ENST00000489426 4479 ntAPPRIS ALT2 TSL 2 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 AC092384.3-202ENST00000564646 2873 ntBASIC4.52□□□□□ -1.69
SYNE1Q8NF91 CDC14A-201ENST00000336454 4137 ntAPPRIS ALT1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 AC008267.1-201ENST00000474858 1069 ntBASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms