Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC22.13■■□□□ 1.13
VPS8Q8N3P4 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC22.13■■□□□ 1.13
VPS8Q8N3P4 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC22.13■■□□□ 1.13
VPS8Q8N3P4 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC22.13■■□□□ 1.13
VPS8Q8N3P4 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
VPS8Q8N3P4 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC22.13■■□□□ 1.13
VPS8Q8N3P4 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
VPS8Q8N3P4 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
VPS8Q8N3P4 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
VPS8Q8N3P4 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
VPS8Q8N3P4 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC22.12■■□□□ 1.13
VPS8Q8N3P4 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC22.12■■□□□ 1.13
VPS8Q8N3P4 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC22.12■■□□□ 1.13
VPS8Q8N3P4 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC22.12■■□□□ 1.13
VPS8Q8N3P4 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC22.12■■□□□ 1.13
VPS8Q8N3P4 AL009178.2-201ENST00000597278 2719 ntBASIC22.12■■□□□ 1.13
VPS8Q8N3P4 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
VPS8Q8N3P4 AC117503.4-201ENST00000623229 1418 ntBASIC22.12■■□□□ 1.13
VPS8Q8N3P4 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
VPS8Q8N3P4 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
VPS8Q8N3P4 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
VPS8Q8N3P4 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC22.12■■□□□ 1.13
VPS8Q8N3P4 HIST2H2BA-201ENST00000412169 381 ntBASIC22.12■■□□□ 1.13
VPS8Q8N3P4 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
VPS8Q8N3P4 HLA-DPB2-205ENST00000435074 1188 ntBASIC22.12■■□□□ 1.13
VPS8Q8N3P4 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC22.12■■□□□ 1.13
VPS8Q8N3P4 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC22.12■■□□□ 1.13
VPS8Q8N3P4 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
VPS8Q8N3P4 NUDT4P2-201ENST00000578341 546 ntBASIC22.12■■□□□ 1.13
VPS8Q8N3P4 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC22.12■■□□□ 1.13
VPS8Q8N3P4 AL161773.1-201ENST00000624845 863 ntBASIC22.12■■□□□ 1.13
VPS8Q8N3P4 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC22.12■■□□□ 1.13
VPS8Q8N3P4 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
VPS8Q8N3P4 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
VPS8Q8N3P4 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC22.12■■□□□ 1.13
VPS8Q8N3P4 DDC-204ENST00000426377 1700 ntTSL 3 BASIC22.11■■□□□ 1.13
VPS8Q8N3P4 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
VPS8Q8N3P4 AC015656.1-201ENST00000624209 3578 ntBASIC22.11■■□□□ 1.13
VPS8Q8N3P4 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC22.11■■□□□ 1.13
VPS8Q8N3P4 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
VPS8Q8N3P4 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC22.11■■□□□ 1.13
VPS8Q8N3P4 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
VPS8Q8N3P4 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
VPS8Q8N3P4 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
VPS8Q8N3P4 RNA5SP417-201ENST00000516459 108 ntBASIC22.11■■□□□ 1.13
VPS8Q8N3P4 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC22.11■■□□□ 1.13
VPS8Q8N3P4 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC22.11■■□□□ 1.13
VPS8Q8N3P4 AC107464.3-201ENST00000609172 737 ntBASIC22.11■■□□□ 1.13
VPS8Q8N3P4 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC22.11■■□□□ 1.13
VPS8Q8N3P4 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
VPS8Q8N3P4 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
VPS8Q8N3P4 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
VPS8Q8N3P4 AC008620.2-201ENST00000510294 1569 ntBASIC22.11■■□□□ 1.13
VPS8Q8N3P4 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
VPS8Q8N3P4 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
VPS8Q8N3P4 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC22.1■■□□□ 1.13
VPS8Q8N3P4 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
VPS8Q8N3P4 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
VPS8Q8N3P4 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
VPS8Q8N3P4 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC22.1■■□□□ 1.13
VPS8Q8N3P4 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC22.1■■□□□ 1.13
VPS8Q8N3P4 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC22.1■■□□□ 1.13
VPS8Q8N3P4 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
VPS8Q8N3P4 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
VPS8Q8N3P4 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC22.1■■□□□ 1.13
VPS8Q8N3P4 AC008267.1-201ENST00000474858 1069 ntBASIC22.1■■□□□ 1.13
VPS8Q8N3P4 AC068867.1-201ENST00000559855 150 ntBASIC22.1■■□□□ 1.13
VPS8Q8N3P4 AP005264.5-201ENST00000590066 467 ntBASIC22.1■■□□□ 1.13
VPS8Q8N3P4 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
VPS8Q8N3P4 AL049840.2-201ENST00000602722 535 ntBASIC22.1■■□□□ 1.13
VPS8Q8N3P4 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC22.1■■□□□ 1.13
VPS8Q8N3P4 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC22.1■■□□□ 1.13
VPS8Q8N3P4 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
VPS8Q8N3P4 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC22.1■■□□□ 1.13
VPS8Q8N3P4 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
VPS8Q8N3P4 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC22.1■■□□□ 1.13
VPS8Q8N3P4 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
VPS8Q8N3P4 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
VPS8Q8N3P4 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
VPS8Q8N3P4 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC22.1■■□□□ 1.13
VPS8Q8N3P4 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
VPS8Q8N3P4 PES1P2-201ENST00000449745 1735 ntBASIC22.09■■□□□ 1.13
VPS8Q8N3P4 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC22.09■■□□□ 1.13
VPS8Q8N3P4 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
VPS8Q8N3P4 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC22.09■■□□□ 1.13
VPS8Q8N3P4 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
VPS8Q8N3P4 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC22.09■■□□□ 1.13
VPS8Q8N3P4 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC22.09■■□□□ 1.13
VPS8Q8N3P4 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
VPS8Q8N3P4 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
VPS8Q8N3P4 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
VPS8Q8N3P4 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC22.09■■□□□ 1.13
VPS8Q8N3P4 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
VPS8Q8N3P4 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
VPS8Q8N3P4 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
VPS8Q8N3P4 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
VPS8Q8N3P4 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC22.09■■□□□ 1.13
VPS8Q8N3P4 AL132994.1-201ENST00000554098 400 ntBASIC22.09■■□□□ 1.13
VPS8Q8N3P4 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
VPS8Q8N3P4 NAT9-224ENST00000583757 583 ntTSL 3 BASIC22.09■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms