Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 CACNA1G-226ENST00000513689 6879 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
RPL39P62891 CACNA1G-228ENST00000514079 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
RPL39P62891 CACNA1G-231ENST00000515165 6870 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
RPL39P62891 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
RPL39P62891 ASB2-201ENST00000315988 2743 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
RPL39P62891 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
RPL39P62891 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC10.27□□□□□ -0.77
RPL39P62891 MIR574-201ENST00000385209 96 ntBASIC10.27□□□□□ -0.77
RPL39P62891 HNRNPFP1-201ENST00000391730 1133 ntBASIC10.27□□□□□ -0.77
RPL39P62891 HNRNPA3P1-201ENST00000401429 1139 ntBASIC10.27□□□□□ -0.77
RPL39P62891 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC10.27□□□□□ -0.77
RPL39P62891 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC10.27□□□□□ -0.77
RPL39P62891 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC10.27□□□□□ -0.77
RPL39P62891 HNRNPA3P5-201ENST00000455201 833 ntBASIC10.27□□□□□ -0.77
RPL39P62891 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC10.27□□□□□ -0.77
RPL39P62891 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC10.27□□□□□ -0.77
RPL39P62891 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC10.27□□□□□ -0.77
RPL39P62891 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC10.27□□□□□ -0.77
RPL39P62891 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC10.27□□□□□ -0.77
RPL39P62891 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC10.27□□□□□ -0.77
RPL39P62891 AC103988.2-201ENST00000561804 725 ntBASIC10.27□□□□□ -0.77
RPL39P62891 MPI-209ENST00000564003 1195 ntTSL 2 BASIC10.27□□□□□ -0.77
RPL39P62891 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC10.27□□□□□ -0.77
RPL39P62891 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC10.27□□□□□ -0.77
RPL39P62891 SSH2-210ENST00000582084 560 ntTSL 3 BASIC10.27□□□□□ -0.77
RPL39P62891 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC10.27□□□□□ -0.77
RPL39P62891 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
RPL39P62891 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC10.27□□□□□ -0.77
RPL39P62891 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC10.27□□□□□ -0.77
RPL39P62891 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC10.27□□□□□ -0.77
RPL39P62891 IFT81-201ENST00000242591 3108 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
RPL39P62891 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC10.27□□□□□ -0.77
RPL39P62891 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
RPL39P62891 ADAM12-202ENST00000368679 7938 ntAPPRIS P4 TSL 1 (best) BASIC10.27□□□□□ -0.77
RPL39P62891 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC10.27□□□□□ -0.77
RPL39P62891 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
RPL39P62891 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC10.27□□□□□ -0.77
RPL39P62891 AL162431.2-201ENST00000358073 2424 ntTSL 2 BASIC10.27□□□□□ -0.77
RPL39P62891 MATN1-AS1-201ENST00000414532 3925 ntTSL 2 BASIC10.27□□□□□ -0.77
RPL39P62891 ADCY4-202ENST00000418030 3353 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
RPL39P62891 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC10.27□□□□□ -0.77
RPL39P62891 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
RPL39P62891 CLIC4-201ENST00000374379 4346 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
RPL39P62891 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC10.27□□□□□ -0.77
RPL39P62891 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
RPL39P62891 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
RPL39P62891 PEX1-201ENST00000248633 4385 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
RPL39P62891 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
RPL39P62891 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.77
RPL39P62891 TRAF3-208ENST00000560371 7640 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
RPL39P62891 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
RPL39P62891 PAM-207ENST00000455264 2898 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
RPL39P62891 TBCE-207ENST00000543662 2117 ntAPPRIS ALT2 TSL 2 BASIC10.27□□□□□ -0.77
RPL39P62891 CALB1-201ENST00000265431 2533 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
RPL39P62891 ACIN1-204ENST00000397341 2738 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
RPL39P62891 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC10.26□□□□□ -0.77
RPL39P62891 SCOC-210ENST00000608372 5129 ntAPPRIS P2 TSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 DCST2-202ENST00000368424 2392 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 SAMD14-202ENST00000330175 4425 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 ZBTB42-201ENST00000342537 3800 ntAPPRIS P1 BASIC10.26□□□□□ -0.77
RPL39P62891 KY-202ENST00000503669 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 INCENP-201ENST00000278849 3698 ntAPPRIS P3 TSL 5 BASIC10.26□□□□□ -0.77
RPL39P62891 ZNF275-201ENST00000370249 5920 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 AL121827.1-201ENST00000370257 3264 ntTSL 2 BASIC10.26□□□□□ -0.77
RPL39P62891 ALDH3A2-201ENST00000176643 3928 ntAPPRIS P3 TSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 PEAR1-202ENST00000338302 4970 ntAPPRIS P1 TSL 5 BASIC10.26□□□□□ -0.77
RPL39P62891 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC10.26□□□□□ -0.77
RPL39P62891 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 GTPBP4-202ENST00000360803 5075 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 RPS15-201ENST00000233609 534 ntTSL 2 BASIC10.26□□□□□ -0.77
RPL39P62891 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC10.26□□□□□ -0.77
RPL39P62891 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 EIF3FP3-201ENST00000434851 1086 ntBASIC10.26□□□□□ -0.77
RPL39P62891 AC125807.1-201ENST00000483097 614 ntBASIC10.26□□□□□ -0.77
RPL39P62891 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC10.26□□□□□ -0.77
RPL39P62891 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC10.26□□□□□ -0.77
RPL39P62891 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC10.26□□□□□ -0.77
RPL39P62891 LY6E-204ENST00000519546 971 ntTSL 2 BASIC10.26□□□□□ -0.77
RPL39P62891 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC10.26□□□□□ -0.77
RPL39P62891 AC069120.2-201ENST00000524091 540 ntBASIC10.26□□□□□ -0.77
RPL39P62891 ZNF890P-202ENST00000530367 1156 ntBASIC10.26□□□□□ -0.77
RPL39P62891 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC10.26□□□□□ -0.77
RPL39P62891 VPS29-207ENST00000549970 818 ntTSL 3 BASIC10.26□□□□□ -0.77
RPL39P62891 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC10.26□□□□□ -0.77
RPL39P62891 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC10.26□□□□□ -0.77
RPL39P62891 SPDYE22P-201ENST00000582158 798 ntBASIC10.26□□□□□ -0.77
RPL39P62891 RPS15-205ENST00000586686 562 ntTSL 5 BASIC10.26□□□□□ -0.77
RPL39P62891 RPS15-208ENST00000591804 711 ntTSL 5 BASIC10.26□□□□□ -0.77
RPL39P62891 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC10.26□□□□□ -0.77
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms