Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 MST1P2-201ENST00000457982 2291 ntBASIC15.13■□□□□ 0.01
HDAC4P56524 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC15.13■□□□□ 0.01
HDAC4P56524 AC010327.5-201ENST00000586923 3061 ntBASIC15.13■□□□□ 0.01
HDAC4P56524 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
HDAC4P56524 AC018735.1-201ENST00000437208 1502 ntBASIC15.12■□□□□ 0.01
HDAC4P56524 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
HDAC4P56524 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC4P56524 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC4P56524 CICP20-201ENST00000443330 2801 ntBASIC15.12■□□□□ 0.01
HDAC4P56524 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
HDAC4P56524 KRT8P29-201ENST00000420409 1371 ntBASIC15.12■□□□□ 0.01
HDAC4P56524 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC15.12■□□□□ 0.01
HDAC4P56524 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC4P56524 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
HDAC4P56524 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC15.12■□□□□ 0.01
HDAC4P56524 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
HDAC4P56524 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC4P56524 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC4P56524 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
HDAC4P56524 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
HDAC4P56524 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC15.12■□□□□ 0.01
HDAC4P56524 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
HDAC4P56524 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
HDAC4P56524 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC15.12■□□□□ 0.01
HDAC4P56524 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC15.12■□□□□ 0.01
HDAC4P56524 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC4P56524 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC4P56524 VDAC1P1-201ENST00000439229 848 ntBASIC15.12■□□□□ 0.01
HDAC4P56524 RNMTL1P1-201ENST00000454103 560 ntBASIC15.12■□□□□ 0.01
HDAC4P56524 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC4P56524 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC4P56524 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC15.12■□□□□ 0.01
HDAC4P56524 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC15.12■□□□□ 0.01
HDAC4P56524 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC15.12■□□□□ 0.01
HDAC4P56524 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC4P56524 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC15.12■□□□□ 0.01
HDAC4P56524 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC4P56524 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC15.12■□□□□ 0.01
HDAC4P56524 PRKN-211ENST00000615065 261 ntTSL 5 BASIC15.12■□□□□ 0.01
HDAC4P56524 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC15.12■□□□□ 0.01
HDAC4P56524 AC022748.3-201ENST00000621828 275 ntBASIC15.12■□□□□ 0.01
HDAC4P56524 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC15.12■□□□□ 0.01
HDAC4P56524 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC4P56524 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC4P56524 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC15.12■□□□□ 0.01
HDAC4P56524 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC4P56524 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC15.12■□□□□ 0.01
HDAC4P56524 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC4P56524 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC4P56524 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC4P56524 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC4P56524 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC4P56524 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC4P56524 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC4P56524 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
HDAC4P56524 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC4P56524 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC15.12■□□□□ 0.01
HDAC4P56524 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC15.11■□□□□ 0.01
HDAC4P56524 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC4P56524 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC4P56524 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC4P56524 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC15.11■□□□□ 0.01
HDAC4P56524 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC4P56524 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC4P56524 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC4P56524 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
HDAC4P56524 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC4P56524 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC4P56524 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC4P56524 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
HDAC4P56524 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC4P56524 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC4P56524 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
HDAC4P56524 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC15.11■□□□□ 0.01
HDAC4P56524 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC15.11■□□□□ 0.01
HDAC4P56524 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC15.11■□□□□ 0.01
HDAC4P56524 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC15.11■□□□□ 0.01
HDAC4P56524 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC15.11■□□□□ 0.01
HDAC4P56524 TUBB8P8-201ENST00000458717 1058 ntBASIC15.11■□□□□ 0.01
HDAC4P56524 ATP6V0CP2-201ENST00000469409 207 ntBASIC15.11■□□□□ 0.01
HDAC4P56524 RPL18P13-201ENST00000478088 569 ntBASIC15.11■□□□□ 0.01
HDAC4P56524 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC15.11■□□□□ 0.01
HDAC4P56524 AC003686.1-201ENST00000550956 1034 ntBASIC15.11■□□□□ 0.01
HDAC4P56524 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC15.11■□□□□ 0.01
HDAC4P56524 AC104982.3-201ENST00000581995 514 ntBASIC15.11■□□□□ 0.01
HDAC4P56524 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC15.11■□□□□ 0.01
HDAC4P56524 PCBP2-OT1-201ENST00000634357 590 ntBASIC15.11■□□□□ 0.01
HDAC4P56524 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC15.11■□□□□ 0.01
HDAC4P56524 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC4P56524 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC4P56524 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC15.11■□□□□ 0.01
HDAC4P56524 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC4P56524 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC4P56524 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
HDAC4P56524 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC4P56524 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
HDAC4P56524 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
HDAC4P56524 TUBB8P4-201ENST00000511806 1324 ntBASIC15.11■□□□□ 0.01
HDAC4P56524 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
HDAC4P56524 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms