Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 ECI2-201ENST00000361538 1380 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL4A5P29400 SULT1A1-203ENST00000395607 1386 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
COL4A5P29400 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC16.73■□□□□ 0.27
COL4A5P29400 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL4A5P29400 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL4A5P29400 GPI-205ENST00000586425 1799 ntTSL 5 BASIC16.73■□□□□ 0.27
COL4A5P29400 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
COL4A5P29400 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC16.73■□□□□ 0.27
COL4A5P29400 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC16.72■□□□□ 0.27
COL4A5P29400 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC16.72■□□□□ 0.27
COL4A5P29400 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL4A5P29400 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL4A5P29400 HSD3BP1-201ENST00000286193 1111 ntBASIC16.72■□□□□ 0.27
COL4A5P29400 NR2C2AP-201ENST00000331552 1293 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL4A5P29400 CHEK2-203ENST00000382565 696 ntTSL 5 BASIC16.72■□□□□ 0.27
COL4A5P29400 FAM197Y6-201ENST00000420524 766 ntBASIC16.72■□□□□ 0.27
COL4A5P29400 NR2C2AP-202ENST00000420605 859 ntTSL 2 BASIC16.72■□□□□ 0.27
COL4A5P29400 AC010086.2-201ENST00000428616 226 ntBASIC16.72■□□□□ 0.27
COL4A5P29400 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC16.72■□□□□ 0.27
COL4A5P29400 KRT19P4-201ENST00000443208 943 ntBASIC16.72■□□□□ 0.27
COL4A5P29400 AL121894.1-201ENST00000450971 436 ntTSL 2 BASIC16.72■□□□□ 0.27
COL4A5P29400 TIMMDC1-207ENST00000493694 710 ntTSL 2 BASIC16.72■□□□□ 0.27
COL4A5P29400 AC137579.2-201ENST00000517714 551 ntTSL 4 BASIC16.72■□□□□ 0.27
COL4A5P29400 AP000920.1-201ENST00000531824 344 ntBASIC16.72■□□□□ 0.27
COL4A5P29400 AC093510.1-202ENST00000546238 442 ntTSL 3 BASIC16.72■□□□□ 0.27
COL4A5P29400 AC004231.3-201ENST00000579136 258 ntTSL 3 BASIC16.72■□□□□ 0.27
COL4A5P29400 AP001094.3-201ENST00000580491 616 ntTSL 2 BASIC16.72■□□□□ 0.27
COL4A5P29400 AC006986.1-201ENST00000612764 241 ntBASIC16.72■□□□□ 0.27
COL4A5P29400 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL4A5P29400 SEC13-209ENST00000397117 1603 ntTSL 5 BASIC16.72■□□□□ 0.27
COL4A5P29400 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL4A5P29400 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL4A5P29400 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC16.72■□□□□ 0.27
COL4A5P29400 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
COL4A5P29400 KRT37-201ENST00000225550 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL4A5P29400 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL4A5P29400 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL4A5P29400 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL4A5P29400 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
COL4A5P29400 AC012617.1-204ENST00000586340 2305 ntBASIC16.72■□□□□ 0.27
COL4A5P29400 IL1F10-201ENST00000341010 1013 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL4A5P29400 NR1I3-201ENST00000367979 1074 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL4A5P29400 NR1I3-207ENST00000367985 1074 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL4A5P29400 SNRPCP15-201ENST00000424055 192 ntBASIC16.72■□□□□ 0.27
COL4A5P29400 AC041040.1-201ENST00000425197 460 ntBASIC16.72■□□□□ 0.27
COL4A5P29400 MARK2P17-201ENST00000498560 841 ntBASIC16.72■□□□□ 0.27
COL4A5P29400 NR1I3-225ENST00000508387 634 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL4A5P29400 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL4A5P29400 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL4A5P29400 NR1H4-203ENST00000392986 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL4A5P29400 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL4A5P29400 RPAIN-202ENST00000381208 1394 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL4A5P29400 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
COL4A5P29400 MMP19-202ENST00000409200 1431 ntTSL 2 BASIC16.71■□□□□ 0.27
COL4A5P29400 NAAA-203ENST00000505594 1425 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
COL4A5P29400 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL4A5P29400 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
COL4A5P29400 ZNF570-202ENST00000586475 1985 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL4A5P29400 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC16.71■□□□□ 0.27
COL4A5P29400 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL4A5P29400 SESN3-201ENST00000278499 1710 ntTSL 2 BASIC16.71■□□□□ 0.27
COL4A5P29400 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL4A5P29400 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL4A5P29400 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC16.71■□□□□ 0.27
COL4A5P29400 TMEM60-201ENST00000257663 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL4A5P29400 AL121656.1-201ENST00000440786 482 ntTSL 5 BASIC16.71■□□□□ 0.27
COL4A5P29400 RPL29P2-202ENST00000498671 657 ntBASIC16.71■□□□□ 0.27
COL4A5P29400 AC010202.1-201ENST00000551181 405 ntBASIC16.71■□□□□ 0.27
COL4A5P29400 AL121790.2-202ENST00000556024 363 ntTSL 5 BASIC16.71■□□□□ 0.27
COL4A5P29400 LINC00514-203ENST00000573465 313 ntTSL 5 BASIC16.71■□□□□ 0.27
COL4A5P29400 GSTT2-203ENST00000634759 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL4A5P29400 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL4A5P29400 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC16.71■□□□□ 0.27
COL4A5P29400 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL4A5P29400 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL4A5P29400 AP001267.2-201ENST00000532619 2086 ntBASIC16.71■□□□□ 0.27
COL4A5P29400 KRT8P38-201ENST00000441370 1430 ntBASIC16.71■□□□□ 0.27
COL4A5P29400 STK16-202ENST00000409260 1493 ntTSL 5 BASIC16.71■□□□□ 0.26
COL4A5P29400 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC16.71■□□□□ 0.26
COL4A5P29400 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
COL4A5P29400 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC16.7■□□□□ 0.26
COL4A5P29400 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.7■□□□□ 0.26
COL4A5P29400 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL4A5P29400 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC16.7■□□□□ 0.26
COL4A5P29400 HSPA8P5-201ENST00000456928 2069 ntBASIC16.7■□□□□ 0.26
COL4A5P29400 AC023157.3-201ENST00000619086 2088 ntBASIC16.7■□□□□ 0.26
COL4A5P29400 AC008741.2-201ENST00000612792 3115 ntBASIC16.7■□□□□ 0.26
COL4A5P29400 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL4A5P29400 AL513477.1-201ENST00000602865 2407 ntBASIC16.7■□□□□ 0.26
COL4A5P29400 HAX1-201ENST00000328703 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL4A5P29400 MYL4-202ENST00000393450 855 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL4A5P29400 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
COL4A5P29400 TOMM5-203ENST00000401811 789 ntTSL 2 BASIC16.7■□□□□ 0.26
COL4A5P29400 AL513165.1-201ENST00000413915 289 ntTSL 3 BASIC16.7■□□□□ 0.26
COL4A5P29400 CORO1C-203ENST00000421578 1296 ntTSL 2 BASIC16.7■□□□□ 0.26
COL4A5P29400 RPSAP69-201ENST00000445739 546 ntTSL 4 BASIC16.7■□□□□ 0.26
COL4A5P29400 PRR34-AS1-203ENST00000451166 877 ntTSL 3 BASIC16.7■□□□□ 0.26
COL4A5P29400 AC007679.1-201ENST00000458609 502 ntBASIC16.7■□□□□ 0.26
COL4A5P29400 RN7SL846P-201ENST00000467429 292 ntBASIC16.7■□□□□ 0.26
COL4A5P29400 AC122694.1-201ENST00000510987 563 ntTSL 4 BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms