Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 AL157996.1-201ENST00000624684 2299 ntBASIC16.02■□□□□ 0.16
TPM1P09493 COL6A3-206ENST00000409809 8916 ntTSL 5 BASIC16.02■□□□□ 0.16
TPM1P09493 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
TPM1P09493 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TPM1P09493 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
TPM1P09493 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
TPM1P09493 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
TPM1P09493 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TPM1P09493 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TPM1P09493 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
TPM1P09493 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.16
TPM1P09493 KCNH6-204ENST00000581784 3017 ntTSL 2 BASIC16.02■□□□□ 0.16
TPM1P09493 ZNF286B-205ENST00000545289 5328 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
TPM1P09493 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TPM1P09493 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC16.02■□□□□ 0.16
TPM1P09493 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.16
TPM1P09493 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TPM1P09493 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TPM1P09493 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TPM1P09493 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
TPM1P09493 APOA1-205ENST00000375329 927 ntTSL 2 BASIC16.02■□□□□ 0.16
TPM1P09493 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
TPM1P09493 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
TPM1P09493 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
TPM1P09493 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
TPM1P09493 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC16.02■□□□□ 0.16
TPM1P09493 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC16.02■□□□□ 0.16
TPM1P09493 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
TPM1P09493 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TPM1P09493 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC16.02■□□□□ 0.16
TPM1P09493 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC16.02■□□□□ 0.16
TPM1P09493 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC16.02■□□□□ 0.16
TPM1P09493 AMER3-202ENST00000423981 6172 ntAPPRIS P1 TSL 4 BASIC16.02■□□□□ 0.15
TPM1P09493 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
TPM1P09493 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
TPM1P09493 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC16.02■□□□□ 0.15
TPM1P09493 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
TPM1P09493 AGER-206ENST00000375070 1463 ntTSL 5 BASIC16.02■□□□□ 0.15
TPM1P09493 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
TPM1P09493 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
TPM1P09493 CACNA1G-229ENST00000514181 6795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
TPM1P09493 ENTPD4-202ENST00000358689 5861 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
TPM1P09493 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TPM1P09493 CFAP65-208ENST00000453220 5877 ntAPPRIS P4 TSL 5 BASIC16.01■□□□□ 0.15
TPM1P09493 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TPM1P09493 GATAD2A-203ENST00000404158 5776 ntAPPRIS ALT1 TSL 2 BASIC16.01■□□□□ 0.15
TPM1P09493 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC16.01■□□□□ 0.15
TPM1P09493 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC16.01■□□□□ 0.15
TPM1P09493 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TPM1P09493 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC16.01■□□□□ 0.15
TPM1P09493 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
TPM1P09493 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
TPM1P09493 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TPM1P09493 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
TPM1P09493 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TPM1P09493 MTMR4-204ENST00000579925 5622 ntTSL 5 BASIC16.01■□□□□ 0.15
TPM1P09493 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TPM1P09493 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TPM1P09493 TRPV1-206ENST00000571088 4105 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TPM1P09493 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
TPM1P09493 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
TPM1P09493 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC16.01■□□□□ 0.15
TPM1P09493 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TPM1P09493 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
TPM1P09493 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC16.01■□□□□ 0.15
TPM1P09493 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC16.01■□□□□ 0.15
TPM1P09493 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC16.01■□□□□ 0.15
TPM1P09493 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
TPM1P09493 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC16.01■□□□□ 0.15
TPM1P09493 AC055876.2-201ENST00000531834 546 ntBASIC16.01■□□□□ 0.15
TPM1P09493 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC16.01■□□□□ 0.15
TPM1P09493 AC124283.3-201ENST00000570869 594 ntBASIC16.01■□□□□ 0.15
TPM1P09493 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC16.01■□□□□ 0.15
TPM1P09493 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC16.01■□□□□ 0.15
TPM1P09493 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TPM1P09493 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TPM1P09493 UQCRB-201ENST00000287022 5575 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TPM1P09493 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC16.01■□□□□ 0.15
TPM1P09493 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
TPM1P09493 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
TPM1P09493 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
TPM1P09493 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
TPM1P09493 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TPM1P09493 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TPM1P09493 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
TPM1P09493 RAPGEF1-201ENST00000372189 6085 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
TPM1P09493 OS9-218ENST00000551035 2246 ntTSL 2 BASIC16■□□□□ 0.15
TPM1P09493 ATG7-201ENST00000354449 4959 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TPM1P09493 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC16■□□□□ 0.15
TPM1P09493 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC16■□□□□ 0.15
TPM1P09493 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TPM1P09493 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC16■□□□□ 0.15
TPM1P09493 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
TPM1P09493 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
TPM1P09493 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC16■□□□□ 0.15
TPM1P09493 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
TPM1P09493 PGAM1P5-202ENST00000552554 2148 ntTSL 1 (best) BASIC16■□□□□ 0.15
TPM1P09493 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC16■□□□□ 0.15
TPM1P09493 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
TPM1P09493 COG6-202ENST00000416691 5257 ntTSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms