Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC16.93■□□□□ 0.3
HLA-DOAP06340 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC16.93■□□□□ 0.3
HLA-DOAP06340 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC16.93■□□□□ 0.3
HLA-DOAP06340 RN7SL665P-201ENST00000578793 300 ntBASIC16.93■□□□□ 0.3
HLA-DOAP06340 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC16.93■□□□□ 0.3
HLA-DOAP06340 SIGLEC22P-201ENST00000599104 714 ntBASIC16.93■□□□□ 0.3
HLA-DOAP06340 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC16.93■□□□□ 0.3
HLA-DOAP06340 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC16.93■□□□□ 0.3
HLA-DOAP06340 AC084781.1-201ENST00000613737 656 ntBASIC16.93■□□□□ 0.3
HLA-DOAP06340 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
HLA-DOAP06340 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DOAP06340 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DOAP06340 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DOAP06340 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC16.93■□□□□ 0.3
HLA-DOAP06340 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
HLA-DOAP06340 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DOAP06340 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
HLA-DOAP06340 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
HLA-DOAP06340 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DOAP06340 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DOAP06340 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DOAP06340 API5-208ENST00000531273 1868 ntTSL 2 BASIC16.93■□□□□ 0.3
HLA-DOAP06340 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DOAP06340 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DOAP06340 DBET-201ENST00000630918 3363 ntBASIC16.92■□□□□ 0.3
HLA-DOAP06340 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
HLA-DOAP06340 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DOAP06340 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
HLA-DOAP06340 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC16.92■□□□□ 0.3
HLA-DOAP06340 GSN-209ENST00000449733 2702 ntTSL 2 BASIC16.92■□□□□ 0.3
HLA-DOAP06340 RN7SL832P-201ENST00000607781 1756 ntBASIC16.92■□□□□ 0.3
HLA-DOAP06340 RER1-203ENST00000378513 3000 ntTSL 3 BASIC16.92■□□□□ 0.3
HLA-DOAP06340 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DOAP06340 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DOAP06340 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC16.92■□□□□ 0.3
HLA-DOAP06340 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.92■□□□□ 0.3
HLA-DOAP06340 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DOAP06340 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DOAP06340 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DOAP06340 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC16.92■□□□□ 0.3
HLA-DOAP06340 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC16.92■□□□□ 0.3
HLA-DOAP06340 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DOAP06340 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DOAP06340 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC16.92■□□□□ 0.3
HLA-DOAP06340 MAX-218ENST00000557746 571 ntTSL 4 BASIC16.92■□□□□ 0.3
HLA-DOAP06340 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC16.92■□□□□ 0.3
HLA-DOAP06340 MIR4750-201ENST00000584564 56 ntBASIC16.92■□□□□ 0.3
HLA-DOAP06340 AL133467.4-201ENST00000602953 725 ntBASIC16.92■□□□□ 0.3
HLA-DOAP06340 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DOAP06340 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC16.92■□□□□ 0.3
HLA-DOAP06340 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DOAP06340 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DOAP06340 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DOAP06340 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DOAP06340 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DOAP06340 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DOAP06340 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DOAP06340 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DOAP06340 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DOAP06340 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DOAP06340 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DOAP06340 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
HLA-DOAP06340 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
HLA-DOAP06340 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DOAP06340 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DOAP06340 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
HLA-DOAP06340 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DOAP06340 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.91■□□□□ 0.3
HLA-DOAP06340 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
HLA-DOAP06340 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DOAP06340 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC16.91■□□□□ 0.3
HLA-DOAP06340 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC16.91■□□□□ 0.3
HLA-DOAP06340 AL591122.2-201ENST00000624125 1853 ntBASIC16.91■□□□□ 0.3
HLA-DOAP06340 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
HLA-DOAP06340 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DOAP06340 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC16.91■□□□□ 0.3
HLA-DOAP06340 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DOAP06340 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC16.91■□□□□ 0.3
HLA-DOAP06340 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DOAP06340 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
HLA-DOAP06340 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC16.91■□□□□ 0.3
HLA-DOAP06340 SAT1-201ENST00000379251 801 ntTSL 2 BASIC16.91■□□□□ 0.3
HLA-DOAP06340 SAT1-202ENST00000379253 909 ntTSL 2 BASIC16.91■□□□□ 0.3
HLA-DOAP06340 SAT1-203ENST00000379254 868 ntTSL 3 BASIC16.91■□□□□ 0.3
HLA-DOAP06340 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DOAP06340 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC16.91■□□□□ 0.3
HLA-DOAP06340 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC16.91■□□□□ 0.3
HLA-DOAP06340 AC098934.1-203ENST00000442868 1262 ntBASIC16.91■□□□□ 0.3
HLA-DOAP06340 ERP29P1-201ENST00000442902 706 ntBASIC16.91■□□□□ 0.3
HLA-DOAP06340 PARP8-206ENST00000503665 572 ntTSL 4 BASIC16.91■□□□□ 0.3
HLA-DOAP06340 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC16.91■□□□□ 0.3
HLA-DOAP06340 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC16.91■□□□□ 0.3
HLA-DOAP06340 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
HLA-DOAP06340 AC025262.2-201ENST00000623975 1056 ntBASIC16.91■□□□□ 0.3
HLA-DOAP06340 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DOAP06340 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.91■□□□□ 0.3
HLA-DOAP06340 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DOAP06340 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC16.91■□□□□ 0.3
HLA-DOAP06340 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
HLA-DOAP06340 AC067750.1-201ENST00000608826 6545 ntBASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms